Preparation - HiroyukiTsujino/JRA55-do GitHub Wiki

• Clone the JRA55-do package to your home directory.

  $ git clone https://github.com/HiroyukiTsujino/JRA55-do JRA55-do

• Hereafter, JRA55-do directory in the home region is referred to as HOMEDIR.

• Create a directory in a storage region for constant data used for processing (e.g., JRA55-do-data)

  • Hereafter, JRA55-do-data directory in the storage region is referred to as DATADIR.

• In DATADIR,

  • put https://climate.mri-jma.go.jp/~htsujino/userspace/JRA55-do/repos/constant_data/JRA55-do-const-data.tgz and extract constant data (data directory will be created).
  • put https://climate.mri-jma.go.jp/~htsujino/userspace/JRA55-do/repos/constant_data/JRA55-do-to-COBESST-table.tgz and extract mapping tables that convert data from JRA55-do (TL319) grid to COBESST (1x1) grid (table.04 directory will be created).
  • put https://climate.mri-jma.go.jp/~htsujino/userspace/JRA55-do/repos/correction_factors/v20200911/JRA55-do-corrfac-v1_3-v1_5_v20200911.tgz and extract correction factors (corrfac directory will be created),

     $ cd ${DATADIR}
     $ tar xvfz JRA55-do-const-data.tgz
     $ tar xvfz JRA55-do-to-COBESST-table.tgz
     $ tar xvfz JRA55-do-corrfac-v1_3-v1_5.tgz

• Additionally in DATADIR, create the following directories

  • products (to store dataset product)
  • work (to store temporary files for processing)

• In work directory, create the following directories

  • jra55fcst_3hr_TL319r
  • jra55fcst_filt_3hr_TL319r
  • jra55fcst_filt_3hr_TL319

• Also in work directory, make a symbolic link from jra55fcst_3hr_TL319 to jra55fcst_filt_3hr_TL319.

  $ ln -s jra55fcst_filt_3hr_TL319 jra55fcst_3hr_TL319

• In a storage region create a directory for storing COBE-SST (e.g., COBESST).
  • Hereafter, COBESST is referred to as COBESST.
• In COBESST,
  • put https://climate.mri-jma.go.jp/~htsujino/userspace/JRA55-do/repos/cobesst_constant_data/COBESST-const-data.tgz and extract constant data for COBESST (data directory will be created).

     $ cd ${COBESST}
     $ tar xvfz COBESST-const-data.tgz

• In COBESST, create daily and monthly directories.
  • In daily directory, create grib, grads, and netCDF directories
  • In monthly directory, create grads and yyyymm directories

  $ cd ${HOMEDIR}
  $ cd linkdir
  $ ln -s ${DATADIR}/corrfac corrfac
  $ ln -s ${DATADIR}/data data
  $ ln -s ${DATADIR}/table.04 table.04
  $ ln -s ${DATADIR}/work work
  $ ln -s ${DATADIR}/products products
  $ ln -s ${COBESST} COBESST

• Put macros.make in ${HOMEDIR}/setting

  $ cd ${HOMEDIR}
  $ cd settings
  $ ln -s sample/macros.make.front.cx2550 marcos.make # for MRI-CX2550

• Overall, structure for HOMEDIR (= JRA55-do) should look like the following.

 JRA55-do
   + linkdir
   |   + data -----> ${DATADIR}/data
   |   + table.04 -> ${DATADIR}/table.04
   |   + corrfac --> ${DATADIR}/corrfac
   |   + work -----> ${DATADIR}/work 
   |   + products -> ${DATADIR}/products
   |   + COBESST --> ${COBESST}
   |
   + settings
       + macros.make

• Structure for DATADIR (= JRA55-do-data) should look like the following.

 JRA55-do-data
   + data
   + table.04
   + corrfac
   + work
   |   + jra55fcst_3hr_TL319r
   |   + jra55fcst_3hr_TL319 -----> jra55fcst_filt_3hr_TL319
   |   + jra55fcst_filt_3hr_TL319r
   |   + jra55fcst_filt_3hr_TL319
   |
   + products

• Structure for COBESST (= COBESST) should look like the following.

 COBESST
   + data
   + daily
   |   + grib
   |   + grads
   |   + netCDF
   |
   + monthly
       + grib
       + grads
       + yyyymm