Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 10x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.003764
0.0040045
0.0055583
0.0040865
0.0042460
0.145171
2
colLogSumExps(X, rows, cols)
0.004068
0.0043825
0.0046240
0.0045340
0.0047475
0.007722
3
colLogSumExps(X[rows, cols])
0.004394
0.0049760
0.0052400
0.0051195
0.0053150
0.011950
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.0000000
1.000000
1.000000
1.0000000
2
colLogSumExps(X, rows, cols)
1.080765
1.094394
0.8319132
1.109507
1.118111
0.0531924
3
colLogSumExps(X[rows, cols])
1.167375
1.242602
0.9427219
1.252784
1.251766
0.0823167
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 10x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.003118
0.0034090
0.0036168
0.003520
0.0036640
0.008098
2
rowLogSumExps(X, cols, rows)
0.003460
0.0037595
0.0052684
0.003878
0.0040725
0.135635
3
rowLogSumExps(X[cols, rows])
0.003852
0.0042680
0.0044754
0.004404
0.0045265
0.008932
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowLogSumExps(X, cols, rows)
1.109686
1.102816
1.456663
1.101705
1.111490
16.749197
3
rowLogSumExps(X[cols, rows])
1.235407
1.251980
1.237417
1.251136
1.235399
1.102988
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 10x10 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 10x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
3.118
3.4090
3.61676
3.5200
3.664
8.098
1
colLogSumExps_X_S
3.764
4.0045
5.55832
4.0865
4.246
145.171
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.00000
1
colLogSumExps_X_S
1.207184
1.174685
1.536823
1.160937
1.158843
17.92677
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 10x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 100x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.073790
0.0751865
0.0770616
0.0756185
0.0764115
0.123131
3
colLogSumExps(X[rows, cols])
0.089068
0.0908800
0.0935489
0.0915475
0.0924520
0.143024
2
colLogSumExps(X, rows, cols)
0.093300
0.0951985
0.0982020
0.0961655
0.0980385
0.151270
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
colLogSumExps(X[rows, cols])
1.207047
1.208728
1.213950
1.210649
1.209923
1.161560
2
colLogSumExps(X, rows, cols)
1.264399
1.266165
1.274331
1.271719
1.283033
1.228529
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 100x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.072754
0.0741605
0.0755480
0.0749855
0.0754155
0.122683
3
rowLogSumExps(X[cols, rows])
0.080422
0.0821035
0.0838968
0.0827245
0.0832340
0.143713
2
rowLogSumExps(X, cols, rows)
0.094192
0.0960640
0.0977496
0.0977315
0.0988820
0.110395
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
3
rowLogSumExps(X[cols, rows])
1.105396
1.107106
1.110510
1.103207
1.103672
1.1714174
2
rowLogSumExps(X, cols, rows)
1.294664
1.295353
1.293875
1.303339
1.311163
0.8998394
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 100x100 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 100x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
72.754
74.1605
75.54796
74.9855
75.4155
122.683
1
colLogSumExps_X_S
73.790
75.1865
77.06161
75.6185
76.4115
123.131
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
1.00000
1.000000
1.000000
1.000000
1.000000
1.000000
1
colLogSumExps_X_S
1.01424
1.013835
1.020036
1.008442
1.013207
1.003652
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 100x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 1000x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.069243
0.0704195
0.0714223
0.0710575
0.0715130
0.088144
3
colLogSumExps(X[rows, cols])
0.085083
0.0863280
0.0870049
0.0867995
0.0872350
0.095591
2
colLogSumExps(X, rows, cols)
0.090485
0.0929215
0.0940630
0.0937890
0.0948475
0.127623
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
colLogSumExps(X[rows, cols])
1.228760
1.225910
1.218177
1.221539
1.219848
1.084487
2
colLogSumExps(X, rows, cols)
1.306775
1.319542
1.316998
1.319903
1.326297
1.447892
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 1000x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.070077
0.0711640
0.0722343
0.0714890
0.0720495
0.118733
3
rowLogSumExps(X[cols, rows])
0.079959
0.0811855
0.0819385
0.0816695
0.0823235
0.086993
2
rowLogSumExps(X, cols, rows)
0.091397
0.0931180
0.0948247
0.0942480
0.0954430
0.107894
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
3
rowLogSumExps(X[cols, rows])
1.141016
1.140823
1.134343
1.142407
1.142596
0.7326775
2
rowLogSumExps(X, cols, rows)
1.304237
1.308499
1.312737
1.318357
1.324687
0.9087111
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 1000x10 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 1000x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
69.243
70.4195
71.42226
71.0575
71.5130
88.144
2
rowLogSumExps_X_S
70.077
71.1640
72.23430
71.4890
72.0495
118.733
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.00000
1.000000
1.000000
1.000000
2
rowLogSumExps_X_S
1.012045
1.010572
1.01137
1.006072
1.007502
1.347034
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 1000x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 10x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.089753
0.0912965
0.0931319
0.0920765
0.0929305
0.121068
3
colLogSumExps(X[rows, cols])
0.099254
0.1011595
0.1025650
0.1017265
0.1029010
0.128791
2
colLogSumExps(X, rows, cols)
0.110992
0.1132805
0.1148021
0.1140350
0.1152220
0.163981
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
colLogSumExps(X[rows, cols])
1.105857
1.108033
1.101287
1.104804
1.107290
1.063791
2
colLogSumExps(X, rows, cols)
1.236638
1.240798
1.232683
1.238481
1.239873
1.354454
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 10x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.087026
0.0887295
0.0907739
0.0895610
0.0904855
0.141141
3
rowLogSumExps(X[cols, rows])
0.095142
0.0972235
0.0995544
0.0980465
0.0992050
0.162084
2
rowLogSumExps(X, cols, rows)
0.109433
0.1119905
0.1136721
0.1134095
0.1147215
0.123788
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
rowLogSumExps(X[cols, rows])
1.093260
1.095729
1.096730
1.094745
1.096364
1.148384
2
rowLogSumExps(X, cols, rows)
1.257475
1.262156
1.252255
1.266282
1.267844
0.877052
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 10x1000 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 10x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
87.026
88.7295
90.77390
89.5610
90.4855
141.141
1
colLogSumExps_X_S
89.753
91.2965
93.13193
92.0765
92.9305
121.068
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
1
colLogSumExps_X_S
1.031335
1.028931
1.025977
1.028087
1.027021
0.8577805
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 10x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 100x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.702012
0.7251745
0.7730765
0.7534285
0.8188575
1.108125
3
colLogSumExps(X[rows, cols])
0.853691
0.8834860
1.0273189
0.9448055
1.0683945
5.588463
2
colLogSumExps(X, rows, cols)
0.910446
0.9540430
1.0488809
1.0386625
1.1324515
1.551972
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
colLogSumExps(X[rows, cols])
1.216063
1.218308
1.328871
1.254008
1.304738
5.043170
2
colLogSumExps(X, rows, cols)
1.296909
1.315605
1.356762
1.378581
1.382965
1.400539
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 100x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.714108
0.7386430
0.8208492
0.761323
0.873566
1.674171
3
rowLogSumExps(X[cols, rows])
0.789893
0.8133575
1.0386781
0.912627
1.099045
7.761841
2
rowLogSumExps(X, cols, rows)
0.969716
1.0194975
1.1353743
1.040480
1.209656
2.084237
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.00000
1.000000
1.000000
1.000000
3
rowLogSumExps(X[cols, rows])
1.106125
1.101151
1.26537
1.198738
1.258114
4.636229
2
rowLogSumExps(X, cols, rows)
1.357940
1.380230
1.38317
1.366673
1.384733
1.244937
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 100x1000 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 100x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
702.012
725.1745
773.0765
753.4285
818.8575
1108.125
2
rowLogSumExps_X_S
714.108
738.6430
820.8492
761.3230
873.5660
1674.171
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.00000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowLogSumExps_X_S
1.01723
1.018573
1.061795
1.010478
1.066811
1.510814
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 100x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 1000x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
0.669550
0.6842555
0.7828316
0.7776545
0.8084675
1.440616
3
colLogSumExps(X[rows, cols])
0.739653
0.7620625
0.8978445
0.8984255
0.9691950
1.857678
2
colLogSumExps(X, rows, cols)
0.879903
0.9246995
1.1304426
0.9851270
1.1237585
8.453971
expr
min
lq
mean
median
uq
max
1
colLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
colLogSumExps(X[rows, cols])
1.104702
1.113710
1.146919
1.155302
1.198805
1.289502
2
colLogSumExps(X, rows, cols)
1.314171
1.351395
1.444043
1.266793
1.389986
5.868303
Table: Benchmarking of rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on 1000x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
0.67819
0.7022890
0.7529331
0.728701
0.7984225
0.872178
3
rowLogSumExps(X[cols, rows])
0.76249
0.7813575
0.8587944
0.795139
0.9697080
1.061498
2
rowLogSumExps(X, cols, rows)
0.93035
0.9803455
1.1362143
1.022622
1.1532995
8.243347
expr
min
lq
mean
median
uq
max
1
rowLogSumExps_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
3
rowLogSumExps(X[cols, rows])
1.124301
1.112587
1.140599
1.091173
1.214530
1.217066
2
rowLogSumExps(X, cols, rows)
1.371813
1.395929
1.509051
1.403349
1.444473
9.451450
Figure: Benchmarking of colLogSumExps_X_S(), colLogSumExps(X, rows, cols)() and colLogSumExps(X[rows, cols])() on 1000x100 data as well as rowLogSumExps_X_S(), rowLogSumExps(X, cols, rows)() and rowLogSumExps(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 1000x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
678.19
702.2890
752.9331
728.7010
798.4225
872.178
1
colLogSumExps_X_S
669.55
684.2555
782.8316
777.6545
808.4675
1440.616
expr
min
lq
mean
median
uq
max
2
rowLogSumExps_X_S
1.0000000
1.0000000
1.000000
1.000000
1.000000
1.000000
1
colLogSumExps_X_S
0.9872602
0.9743218
1.039709
1.067179
1.012581
1.651745
Figure: Benchmarking of colLogSumExps_X_S() and rowLogSumExps_X_S() on 1000x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.