Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+10x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.001091
0.0012340
0.0023884
0.0013290
0.001448
0.101899
2
colDiffs(X, rows, cols)
0.001271
0.0014815
0.0016570
0.0015785
0.001671
0.003063
3
colDiffs(X[rows, cols])
0.001570
0.0019545
0.0021673
0.0020585
0.002199
0.008013
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.0000000
1.000000
1.000000
1.0000000
2
colDiffs(X, rows, cols)
1.164986
1.200567
0.6937606
1.187735
1.154006
0.0300592
3
colDiffs(X[rows, cols])
1.439047
1.583874
0.9074302
1.548909
1.518646
0.0786367
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+10x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.001095
0.0012615
0.0014586
0.0013540
0.0014220
0.006309
2
rowDiffs(X, cols, rows)
0.001318
0.0015310
0.0026410
0.0016080
0.0017385
0.093415
3
rowDiffs(X[cols, rows])
0.001568
0.0019345
0.0021375
0.0020505
0.0021545
0.006355
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.203653
1.213635
1.810662
1.187592
1.222574
14.806626
3
rowDiffs(X[cols, rows])
1.431963
1.533492
1.465429
1.514402
1.515119
1.007291
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+10x10 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+10x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.091
1.2340
2.38836
1.329
1.448
101.899
2
rowDiffs_X_S
1.095
1.2615
1.45861
1.354
1.422
6.309
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.0000000
1.000000
1.0000000
1.0000000
2
rowDiffs_X_S
1.003666
1.022285
0.6107161
1.018811
0.9820442
0.0619142
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+10x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+100x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.005324
0.0055875
0.0081225
0.0057265
0.0089555
0.039719
2
colDiffs(X, rows, cols)
0.008646
0.0089740
0.0107692
0.0091480
0.0094515
0.046548
3
colDiffs(X[rows, cols])
0.012920
0.0132015
0.0212689
0.0135625
0.0214185
0.178538
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.623967
1.606085
1.325854
1.597485
1.055385
1.171933
3
colDiffs(X[rows, cols])
2.426747
2.362685
2.618527
2.368375
2.391659
4.495028
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+100x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.005338
0.0055090
0.0057910
0.0056115
0.0057570
0.010078
2
rowDiffs(X, cols, rows)
0.008235
0.0084540
0.0086759
0.0085615
0.0087395
0.012207
3
rowDiffs(X[cols, rows])
0.012938
0.0131685
0.0138666
0.0132730
0.0134630
0.056660
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.542713
1.534580
1.498175
1.525706
1.518065
1.211252
3
rowDiffs(X[cols, rows])
2.423754
2.390361
2.394532
2.365321
2.338544
5.622147
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+100x100 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+100x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
5.338
5.5090
5.79096
5.6115
5.7570
10.078
1
colDiffs_X_S
5.324
5.5875
8.12247
5.7265
8.9555
39.719
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.0000000
1.000000
1.000000
1.000000
1.000000
1.000000
1
colDiffs_X_S
0.9973773
1.014249
1.402612
1.020494
1.555584
3.941159
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+100x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+1000x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.005339
0.0055580
0.0058249
0.0056480
0.0057980
0.009813
2
colDiffs(X, rows, cols)
0.009087
0.0093785
0.0097250
0.0094570
0.0095825
0.031486
3
colDiffs(X[rows, cols])
0.012544
0.0130270
0.0132707
0.0131635
0.0132730
0.016739
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.702004
1.687388
1.669549
1.674398
1.652725
3.208601
3
colDiffs(X[rows, cols])
2.349504
2.343829
2.278259
2.330648
2.289238
1.705798
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+1000x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.005727
0.0058745
0.0064510
0.0059620
0.0060875
0.039065
2
rowDiffs(X, cols, rows)
0.009787
0.0100330
0.0103754
0.0101645
0.0103020
0.025221
3
rowDiffs(X[cols, rows])
0.014053
0.0145150
0.0148189
0.0146570
0.0148595
0.019932
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
2
rowDiffs(X, cols, rows)
1.708923
1.707890
1.608329
1.704881
1.692320
0.6456163
3
rowDiffs(X[cols, rows])
2.453815
2.470849
2.297144
2.458403
2.440986
0.5102265
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+1000x10 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+1000x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
5.339
5.5580
5.82494
5.648
5.7980
9.813
2
rowDiffs_X_S
5.727
5.8745
6.45101
5.962
6.0875
39.065
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs_X_S
1.072673
1.056945
1.107481
1.055595
1.049931
3.980944
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+1000x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+10x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.005130
0.005291
0.0055358
0.0053835
0.0054755
0.009254
2
colDiffs(X, rows, cols)
0.008535
0.008873
0.0092883
0.0089775
0.0090825
0.033128
3
colDiffs(X[rows, cols])
0.013391
0.013846
0.0142119
0.0139950
0.0141920
0.019400
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.663743
1.676999
1.677862
1.667595
1.658753
3.579857
3
colDiffs(X[rows, cols])
2.610331
2.616897
2.567280
2.599610
2.591909
2.096391
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+10x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.004781
0.004987
0.0054427
0.0050700
0.005226
0.029440
2
rowDiffs(X, cols, rows)
0.007709
0.007960
0.0082193
0.0080545
0.008212
0.012504
3
rowDiffs(X[cols, rows])
0.012309
0.012498
0.0129289
0.0126135
0.012793
0.024966
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
2
rowDiffs(X, cols, rows)
1.612424
1.596150
1.510162
1.588659
1.571374
0.4247283
3
rowDiffs(X[cols, rows])
2.574566
2.506116
2.375478
2.487870
2.447952
0.8480299
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+10x1000 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+10x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
4.781
4.987
5.44266
5.0700
5.2260
29.440
1
colDiffs_X_S
5.130
5.291
5.53577
5.3835
5.4755
9.254
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
1
colDiffs_X_S
1.072997
1.060958
1.017107
1.061834
1.047742
0.3143342
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+10x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+100x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.039308
0.0403705
0.0413522
0.0406230
0.0409395
0.077276
2
colDiffs(X, rows, cols)
0.073999
0.0760795
0.0775657
0.0762720
0.0766425
0.158858
3
colDiffs(X[rows, cols])
0.108884
0.1122845
0.1129651
0.1126845
0.1133515
0.124285
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.882543
1.884532
1.875736
1.877557
1.872092
2.055722
3
colDiffs(X[rows, cols])
2.770021
2.781350
2.731783
2.773909
2.768756
1.608326
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+100x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.039235
0.0397820
0.0419611
0.0404785
0.0410085
0.091386
2
rowDiffs(X, cols, rows)
0.067867
0.0685735
0.0712070
0.0699110
0.0704300
0.111323
3
rowDiffs(X[cols, rows])
0.100585
0.1017305
0.1077241
0.1029630
0.1048435
0.195772
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.729757
1.723732
1.696977
1.727114
1.717449
1.218163
3
rowDiffs(X[cols, rows])
2.563655
2.557199
2.567236
2.543647
2.556628
2.142254
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+100x1000 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+100x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
39.235
39.7820
41.96112
40.4785
41.0085
91.386
1
colDiffs_X_S
39.308
40.3705
41.35216
40.6230
40.9395
77.276
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.000000
1.000000
1.0000000
1.00000
1.0000000
1.0000
1
colDiffs_X_S
1.001861
1.014793
0.9854875
1.00357
0.9983174
0.8456
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+100x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+1000x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.039726
0.0405095
0.0414681
0.041229
0.0416405
0.054515
2
colDiffs(X, rows, cols)
0.072423
0.0733265
0.0747335
0.074536
0.0749220
0.106975
3
colDiffs(X[rows, cols])
0.101311
0.1028045
0.1059735
0.104548
0.1055730
0.172245
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.823063
1.810106
1.802191
1.807854
1.799258
1.962304
3
colDiffs(X[rows, cols])
2.550244
2.537787
2.555541
2.535788
2.535344
3.159589
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on integer+1000x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.040435
0.0408685
0.0414823
0.0410570
0.0415155
0.053527
2
rowDiffs(X, cols, rows)
0.072863
0.0733020
0.0739522
0.0735420
0.0739435
0.081630
3
rowDiffs(X[cols, rows])
0.111725
0.1124385
0.1151624
0.1128715
0.1141905
0.212579
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.801978
1.793606
1.782741
1.791217
1.781106
1.525025
3
rowDiffs(X[cols, rows])
2.763076
2.751227
2.776185
2.749141
2.750551
3.971435
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on integer+1000x100 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+1000x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
40.435
40.8685
41.48227
41.057
41.5155
53.527
1
colDiffs_X_S
39.726
40.5095
41.46814
41.229
41.6405
54.515
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.0000000
1.0000000
1.0000000
1.000000
1.000000
1.000000
1
colDiffs_X_S
0.9824657
0.9912157
0.9996594
1.004189
1.003011
1.018458
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on integer+1000x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+10x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.001221
0.0013660
0.0017599
0.0014260
0.0015315
0.030316
2
colDiffs(X, rows, cols)
0.001333
0.0015735
0.0017206
0.0016345
0.0017520
0.005095
3
colDiffs(X[rows, cols])
0.001923
0.0021990
0.0023842
0.0022755
0.0024230
0.009834
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.0000000
1.000000
1.000000
1.0000000
2
colDiffs(X, rows, cols)
1.091728
1.151903
0.9776525
1.146213
1.143976
0.1680631
3
colDiffs(X[rows, cols])
1.574939
1.609810
1.3547016
1.595722
1.582109
0.3243832
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+10x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.001180
0.0012805
0.0013782
0.0013225
0.0014020
0.003003
2
rowDiffs(X, cols, rows)
0.001353
0.0015270
0.0018422
0.0015790
0.0017075
0.024083
3
rowDiffs(X[cols, rows])
0.001767
0.0019435
0.0020706
0.0019910
0.0021120
0.005571
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.146610
1.192503
1.336722
1.193951
1.217903
8.019647
3
rowDiffs(X[cols, rows])
1.497458
1.517767
1.502463
1.505482
1.506419
1.855145
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+10x10 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+10x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.180
1.2805
1.37817
1.3225
1.4020
3.003
1
colDiffs_X_S
1.221
1.3660
1.75993
1.4260
1.5315
30.316
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.00000
1
colDiffs_X_S
1.034746
1.066771
1.277005
1.078261
1.092368
10.09524
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+10x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+100x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.004421
0.0049180
0.0059535
0.006255
0.0066635
0.010450
2
colDiffs(X, rows, cols)
0.007536
0.0080215
0.0085251
0.008248
0.0085180
0.019900
3
colDiffs(X[rows, cols])
0.019850
0.0205255
0.0224120
0.021927
0.0224355
0.067467
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.704592
1.631049
1.431950
1.318625
1.278307
1.904306
3
colDiffs(X[rows, cols])
4.489934
4.173546
3.764506
3.505516
3.366924
6.456172
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+100x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.004366
0.0049175
0.0059636
0.0062895
0.006589
0.008911
2
rowDiffs(X, cols, rows)
0.007813
0.0083855
0.0088068
0.0086520
0.008881
0.013165
3
rowDiffs(X[cols, rows])
0.011526
0.0122080
0.0139787
0.0137565
0.014331
0.045332
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.789510
1.705236
1.476767
1.375626
1.347852
1.477388
3
rowDiffs(X[cols, rows])
2.639945
2.482562
2.344003
2.187217
2.174989
5.087196
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+100x100 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+100x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
4.421
4.9180
5.95349
6.2550
6.6635
10.450
2
rowDiffs_X_S
4.366
4.9175
5.96359
6.2895
6.5890
8.911
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.0000000
1.0000000
1.000000
1.000000
1.0000000
1.0000000
2
rowDiffs_X_S
0.9875594
0.9998983
1.001696
1.005516
0.9888197
0.8527273
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+100x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+1000x10 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.004376
0.0051410
0.0078655
0.0066685
0.0074575
0.029527
2
colDiffs(X, rows, cols)
0.007692
0.0084225
0.0107188
0.0087285
0.0096460
0.034947
3
colDiffs(X[rows, cols])
0.020139
0.0207075
0.0258190
0.0222230
0.0237175
0.070039
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.757770
1.638300
1.362754
1.308915
1.293463
1.183561
3
colDiffs(X[rows, cols])
4.602148
4.027913
3.282552
3.332534
3.180355
2.372032
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+1000x10 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.004147
0.005472
0.0067631
0.0063880
0.0067495
0.038996
2
rowDiffs(X, cols, rows)
0.009847
0.010400
0.0109062
0.0106120
0.0107630
0.029539
3
rowDiffs(X[cols, rows])
0.013736
0.015166
0.0158284
0.0159175
0.0162925
0.021415
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
2
rowDiffs(X, cols, rows)
2.374488
1.900585
1.612601
1.661240
1.594637
0.7574879
3
rowDiffs(X[cols, rows])
3.312274
2.771564
2.340399
2.491782
2.413883
0.5491589
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+1000x10 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+1000x10 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
4.147
5.472
6.76313
6.3880
6.7495
38.996
1
colDiffs_X_S
4.376
5.141
7.86552
6.6685
7.4575
29.527
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.000000
1.0000000
1.000
1.00000
1.000000
1.0000000
1
colDiffs_X_S
1.055221
0.9395102
1.163
1.04391
1.104897
0.7571802
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+1000x10 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+10x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.004063
0.0045650
0.0057744
0.0055980
0.0060260
0.036479
2
colDiffs(X, rows, cols)
0.008793
0.0092485
0.0100056
0.0094615
0.0096425
0.052644
3
colDiffs(X[rows, cols])
0.013318
0.0143585
0.0154045
0.0153940
0.0159020
0.022930
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.0000000
2
colDiffs(X, rows, cols)
2.164164
2.025958
1.732763
1.690157
1.600149
1.4431317
3
colDiffs(X[rows, cols])
3.277874
3.145345
2.667724
2.749911
2.638898
0.6285808
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+10x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.003720
0.0054570
0.0060726
0.005778
0.006033
0.033113
2
rowDiffs(X, cols, rows)
0.007415
0.0079015
0.0085686
0.008188
0.008419
0.040076
3
rowDiffs(X[cols, rows])
0.011631
0.0135290
0.0142688
0.013870
0.014210
0.034452
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
1.993280
1.447957
1.411026
1.417099
1.395492
1.210280
3
rowDiffs(X[cols, rows])
3.126613
2.479201
2.349689
2.400485
2.355379
1.040437
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+10x1000 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+10x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
4.063
4.565
5.77439
5.598
6.026
36.479
2
rowDiffs_X_S
3.720
5.457
6.07263
5.778
6.033
33.113
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.0000000
1.0000
1.000000
1.000000
1.000000
1.0000000
2
rowDiffs_X_S
0.9155796
1.1954
1.051649
1.032154
1.001162
0.9077277
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+10x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+100x1000 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.033815
0.035542
0.0800326
0.0492765
0.1263535
0.169962
2
colDiffs(X, rows, cols)
0.066597
0.068433
0.1108244
0.0825050
0.1708720
0.205080
3
colDiffs(X[rows, cols])
0.187242
0.192313
0.3433570
0.2327500
0.3806580
7.369489
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.969451
1.925412
1.384741
1.674327
1.352333
1.206623
3
colDiffs(X[rows, cols])
5.537247
5.410866
4.290212
4.723347
3.012643
43.359627
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+100x1000 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.033111
0.0363000
0.0736204
0.0416885
0.1268655
0.142161
2
rowDiffs(X, cols, rows)
0.067007
0.0684435
0.1836151
0.0820270
0.1715915
7.180782
3
rowDiffs(X[cols, rows])
0.107105
0.1115635
0.1933004
0.1298830
0.3001800
0.325740
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
rowDiffs(X, cols, rows)
2.023708
1.885496
2.494080
1.967617
1.352547
50.511617
3
rowDiffs(X[cols, rows])
3.234726
3.073375
2.625638
3.115559
2.366128
2.291346
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+100x1000 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+100x1000 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
33.111
36.300
73.62036
41.6885
126.8655
142.161
1
colDiffs_X_S
33.815
35.542
80.03263
49.2765
126.3535
169.962
expr
min
lq
mean
median
uq
max
2
rowDiffs_X_S
1.000000
1.0000000
1.000000
1.000000
1.0000000
1.00000
1
colDiffs_X_S
1.021262
0.9791185
1.087099
1.182017
0.9959642
1.19556
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+100x1000 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+1000x100 data. The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
0.033956
0.0358095
0.0724575
0.0428235
0.125650
0.157237
2
colDiffs(X, rows, cols)
0.062317
0.0636225
0.1053283
0.0694575
0.164298
0.170479
3
colDiffs(X[rows, cols])
0.108404
0.1147840
0.2376048
0.1349520
0.299808
4.780825
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
2
colDiffs(X, rows, cols)
1.835228
1.776693
1.453656
1.621948
1.307585
1.084217
3
colDiffs(X[rows, cols])
3.192484
3.205406
3.279227
3.151354
2.386057
30.405216
Table: Benchmarking of rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on double+1000x100 data (transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
0.033388
0.0363885
0.1431267
0.0483815
0.1278610
6.522680
2
rowDiffs(X, cols, rows)
0.073139
0.0742570
0.1271230
0.0907515
0.1766875
0.481092
3
rowDiffs(X[cols, rows])
0.115327
0.1184000
0.1909909
0.1368305
0.3002710
0.402991
expr
min
lq
mean
median
uq
max
1
rowDiffs_X_S
1.000000
1.000000
1.0000000
1.000000
1.000000
1.0000000
2
rowDiffs(X, cols, rows)
2.190577
2.040672
0.8881854
1.875748
1.381872
0.0737568
3
rowDiffs(X[cols, rows])
3.454145
3.253775
1.3344183
2.828158
2.348417
0.0617830
Figure: Benchmarking of colDiffs_X_S(), colDiffs(X, rows, cols)() and colDiffs(X[rows, cols])() on double+1000x100 data as well as rowDiffs_X_S(), rowDiffs(X, cols, rows)() and rowDiffs(X[cols, rows])() on the same data transposed. Outliers are displayed as crosses. Times are in milliseconds.
Table: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+1000x100 data (original and transposed). The top panel shows times in milliseconds and the bottom panel shows relative times.
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
33.956
35.8095
72.45754
42.8235
125.650
157.237
2
rowDiffs_X_S
33.388
36.3885
143.12670
48.3815
127.861
6522.680
expr
min
lq
mean
median
uq
max
1
colDiffs_X_S
1.0000000
1.000000
1.000000
1.000000
1.000000
1.00000
2
rowDiffs_X_S
0.9832725
1.016169
1.975318
1.129789
1.017597
41.48311
Figure: Benchmarking of colDiffs_X_S() and rowDiffs_X_S() on double+1000x100 data (original and transposed). Outliers are displayed as crosses. Times are in milliseconds.