phenopipe postprocess home - Gregor-Mendel-Institute/PhenoBox-System GitHub Wiki

Phenopipe Postprocessing Server

Setup

R Scripting

On this server the postprocessing of the IAP analysis results will be performed. You have the possibility to upload your own R scripts to this server which you can select to be applied on the results via the web interface. This enables you to run your scripts in an automated way on a powerful server with more resources than your local machine.

System Requirements

  • *nix operating system
    • Tested on Scientific Linux 6
  • Java Runtime Environment
  • MongoDB 3.4

A R installation is not required because we internally use Renjin to execute the R scripts. This results in faster code execution than standard R and additionally we can easily communication between the Java server code and the actual R scripts and can execute multiple scripts in parallel.

⚠️ **GitHub.com Fallback** ⚠️