The GRCh37.p13 assembly - GooglingTheCancerGenome/sv-callers GitHub Wiki

Assembly:

GRCh37.p13 (Genome Reference Consortium Human Reference 37), INSDC Assembly GCA_000001405.14, Feb 2009

  • Base Pairs: 3,326,743,047
  • Golden Path Length: 3,098,825,702
  • Annotation method: Full genebuild
  • Genebuild started: Jul 2010
  • Genebuild released: Apr 2011
  • Genebuild last updated/patched Sep 2013
  • Database version: 99.37
  • Gencode version: GENCODE 19

mtDNA:

  • Molecule name: Mitochondrion MT
  • GenBank ID: J01415.2
  • RefSeq ID: NC_012920.1

Reconstructing UBEC "Homo_sapiens.GRCh37.GATK.illumina.fasta":

  1. downloading chromosome sequences for GRCh37.p13 in FASTA format from NCBI;
  2. renaming FASTA headers with chromosome names, as in "Homo_sapiens.GRCh37.GATK.illumina.fasta";
  3. adding NC_012920.1 as "MT";
  4. compute md5 checksum