The GRCh37.p13 assembly - GooglingTheCancerGenome/sv-callers GitHub Wiki

Assembly:

GRCh37.p13 (Genome Reference Consortium Human Reference 37), INSDC Assembly GCA_000001405.14, Feb 2009

• Base Pairs: 3,326,743,047
• Golden Path Length: 3,098,825,702
• Annotation method: Full genebuild
• Genebuild started: Jul 2010
• Genebuild released: Apr 2011
• Genebuild last updated/patched Sep 2013
• Database version: 99.37
• Gencode version: GENCODE 19

mtDNA:

• Molecule name: Mitochondrion MT
• GenBank ID: J01415.2
• RefSeq ID: NC_012920.1

Reconstructing UBEC "Homo_sapiens.GRCh37.GATK.illumina.fasta":

1. downloading chromosome sequences for GRCh37.p13 in FASTA format from NCBI;
2. renaming FASTA headers with chromosome names, as in "Homo_sapiens.GRCh37.GATK.illumina.fasta";
3. adding NC_012920.1 as "MT";
4. compute md5 checksum