Arivale on R - Gibbons-Lab/wiki GitHub Wiki
Arivale on R
In R there you only need to install the Arivale Data Interface which can be done with:
install.packages("remotes")
remotes::install_local("/proj/gibbons/software/arivale-data-interface/Rpkg")
There is unfortunately very little documentation but you only need two commands for the most part:
**list_snapshot_content()** This will give you a list of all available data.
**get_snapshot()** This will get you the data from a particular data group. For instance to get all blood chemistries:
library(arivale.data.interface)
chems <- get_snapshot("chemistries")
get_snapshot
always returns a data.table
. So it may be helpful to get familiar with those: https://rdatatable.gitlab.io/data.table/.