Report 5 - GeorgeIniatis/Blood_Brain_Barrier_Drug_Prediction GitHub Wiki
PubMed API searches
PubMed searches produced 16, manually verified, compounds and drugs (15 BBB-, 1 BBB+) from 35 matches
PubMed Central produce 70, manually verified, compounds and drugs (70 BBB-) from 360 matches
Tried to use the Elsevier API but couldn't make it work
The DOI of each academic paper was provided as source for compounds and drugs. When it wasn't available either a link to PubMed or PubMed Central was provided as the source
Dataset after removing duplicates and unknown compound is currently at 2321 compounds and drugs
1755 BBB+
566 BBB-
334 entries having side effects and indications
Did not have a chance to look at any ML tutorials
Questions/Topics to discuss
Might give Springer API a try
Would be nice to find a relationship extraction library instead of manually going through matches