Python API Usage - GenomicsDB/GenomicsSampleAPIs GitHub Wiki

Using the Python API

Under the example folder single_position_query.py shows how to use the APIs. Use the -h option to get the details of the command line options to run the query.

usage: single_position_query.py [-h] -c CHROMOSOME -p POSITION -a ATTRIBUTES [ATTRIBUTES ...]  

Here are the options for single_position_query.py

Option	Description
-h, --help	show this help message and exit
-c CHROMOSOME, --chromosome CHROMOSOME	Chromosome or contig name that is in the first column of the VCF
-p POSITION, --position POSITION	position in the contig to query from
-a ATTRIBUTES [ATTRIBUTES ...], --attributes ATTRIBUTES [ATTRIBUTES ...]	List of attributes to fetch

Example command

./single_position_query.py -c 1 -s 94986 -a ALT REF QUAL PL AC AN AF