Version History - GarrettJenkinson/informME GitHub Wiki

informME attempts to follow the rules of semantic versioning. Briefly, the zero in v0.X.Y indicates that the software is not ready for production use, since we are academics developing the software part-time. A version of the software v0.X.Z should be backward-compatible with any version v0.X.Y for Y<Z, but this backward-compatability does not hold across major point releases such as the move to v0.3.0 from v0.2.0.

v0.3.2 - Added methylation sensitivity index (MSI) to output. Improved checking of user inputs to catch errors early. Tabulate output bedGraph files. Documentation improvements.

v0.3.1 - More informative error messages. Fix UI to expose ability to model single-ended sequencing reads. Documentation improvements.

v0.3.0 - Code reorganized into a source and bin directory structure. Wrapper shell scripts added to all user callable functions. I/O directories no longer inside code directories. General UI improvements for easier usage.

v0.2.2 - Minor updates in gene ranking and small updates getting ready for the next major reorganization release.

v0.2.1 - Added R utilities for DMR detection and gene ranking using the Jensen-Shannon distance (JSD). Various documentation improvements.

v0.2.0 - Code reorganized into more specialized directories, streamlined, and general SGE submission scripts provided as a guide. Updated README's. Variable names changed to reflect published notation.

v0.1.0 - Initial release. Code widely tested internally. Code used to create results for ref [1].