Create Custom content.yaml File Import Specific Lab Workflows - GTAC-MGI/GTAC-ESP-LIMS GitHub Wiki

Custom content.yaml file creator script: content_yaml_parser.py

Run from washu_gtac directory

usage: -labs/-l option takes a comma separated list of labs to import

Example to import single cell and sequencing workflows only: python utils/content_yaml_parser.py -l sc,seq

Then run make install

To restore the content.yaml file back to it's normal configuration, use the --restore/-r flag: python utils/content_yaml_parser.py -r

** The --restore function MUST be run prior to pushing branch to Git, script will restore content.yaml automatically before parsing -labs if run more than once.