CALM Projects - FrancisCrickInstitute/Image-Analysis-Group GitHub Wiki
Past Projects
David Barry
Automated staging of zebrafish embryos using machine learning.
Rebecca A Jones, Matthew J Renshaw, David J Barry, James C Smith
Wellcome Open Res. April 26 2023
A FIJI macro for quantifying pattern in extracellular matrix
Esther Wershof 1 2 3, Danielle Park 4, David J Barry 5, Robert P Jenkins 2, Antonio Rullan 2, Anna Wilkins 2, Karin Schlegelmilch 2, Ioannis Roxanis 6, Kurt I Anderson 5, Paul A Bates 7, Erik Sahai 8
Life Sci Alliance, Jan 27, 2021
Todd Fallesen
A Sophie Brumm 1, Afshan McCarthy 1, Claudia Gerri 1, Todd Fallesen 2, Laura Woods 3, Riley McMahon 3, Athanasios Papathanasiou 4, Kay Elder 4, Phil Snell 4, Leila Christie 4, Patricia Garcia 5, Valerie Shaikly 5, Mohamed Taranissi 5, Paul Serhal 6, Rabi A Odia 6, Mina Vasilic 6, Anna Osnato 7, Peter J Rugg-Gunn 8, Ludovic Vallier 9, Caroline S Hill 10, Kathy K Niakan 11
Developmental Cell, Jan 2025
Loss of TET2 in human hematopoietic stem cells alters the development and function of neutrophils Hector Huerga Encabo 1, Iker Valle Aramburu 2, Manuel Garcia-Albornoz 3, Marion Piganeau 3, Henry Wood 3, Anna Song 3, Alessandra Ferrelli 3, Aneesh Sharma 3, Carlos M Minutti 4, Marie-Charlotte Domart 5, Despoina Papazoglou 3, Kristian Gurashi 6, Miriam Llorian Sopena 7, Robert Goldstone 7, Todd Fallesen 8, Qian Wang 2, Linda Ariza-McNaughton 3, Daniel H Wiseman 6, Kiran Batta 6, Rajeev Gupta 9, Venizelos Papayannopoulos 10, Dominique Bonnet 11
Cell Stem Cell, June 2023
Chromosome arm length, and a species-specific determinant, define chromosome arm width
Yasutaka Kakui 1, Christopher Barrington 2, Yoshiharu Kusano 3, Rahul Thadani 4, Todd Fallesen 5, Toru Hirota 3, Frank Uhlmann 6
Cell Reports, December 6 2022
Molecular profiling of enteric nervous system cell lineages Yuuki Obata 1 2, Álvaro Castaño 3 4, Todd L Fallesen 5, Ana Carina Bon-Frauches 3, Stefan Boeing 6 7, Almaz Huseynova 8, Sarah McCallum 3 9, Reena Lasrado 3, Tiffany A Heanue 10, Vassilis Pachnis 11
Nature Protocols, August 2022
KLF17 promotes human naïve pluripotency but is not required for its establishment
Rebecca A Lea 1, Afshan McCarthy 1, Stefan Boeing 2, Todd Fallesen 3, Kay Elder 4, Phil Snell 4, Leila Christie 4, Sarah Adkins 5, Valerie Shaikly 5, Mohamed Taranissi 5, Kathy K Niakan 1 6
Development Nov 2021
An optogenetic method for interrogating YAP1 and TAZ nuclear-cytoplasmic shuttling
Anna M Dowbaj 1, Robert P Jenkins 1, Daniel Williamson 2, John M Heddleston 3, Alessandro Ciccarelli 4, Todd Fallesen 4, Klaus M Hahn 5, Reuben D O'Dea 2, John R King 2, Marco Montagner 1 6, Erik Sahai 1
Journal Cell Science, July 2021
Neuronal programming by microbiota regulates intestinal physiology
Yuuki Obata 1, Álvaro Castaño 2, Stefan Boeing 2, Ana Carina Bon-Frauches 2, Candice Fung 3, Todd Fallesen 2, Mercedes Gomez de Agüero 4, Bahtiyar Yilmaz 4, Rita Lopes 2, Almaz Huseynova 2, Stuart Horswell 2, Muralidhara Rao Maradana 2, Werend Boesmans 5 6, Pieter Vanden Berghe 3, Andrew J Murray 7, Brigitta Stockinger # 2, Andrew J Macpherson # 4, Vassilis Pachnis # 8
Nature, Feb 2020