EXIOBASE Wiki

This is the wiki for EXIOBASE development. At the moment it is, well, in development.

General and Development Notes

There's general information such as a description of the directory layout, a note on parallelism, and practialities of working with datamanager and Snakemake available in general and development notes.

Specific notes on each repository

Bootstrap

The bootstrap repository is the installer and updater for EXIOBASE. It can also create backups of the installation.

See the bootstrap wiki page.

Datamanager

The datamanager repository is the package through which all data retrieval and storage requests happen. It obtains third-party data such as via HTTP requests, stores fixed data, and acts as an archive for storing copies of data calculated during processing.

See the datamanager wiki page.

Pipeline

The pipeline repository is the Snakemake setup for EXIOBASE. This contains the rules and configuration necessary to run EXIOBASE in its entirety.

See the pipeline wiki page.

Practical Development Notes

Aspects of the practicalities of working with datamanager and Snakemake, and extending functionality, are documented in the practical and development notes page.

Topic orientated notes

EXIOBASE wiki pages

• Environments, Mamba, and Pip (including warnings!)
• Some Notes and Thoughts on the Development/Refactoring for EXIOBASE