Survival coxsummary predictsurvivalfunction - CyrilB1531/lodestar GitHub Wiki
Development build. This page describes
main, not a released package. The latest published Lodestar.Survival is 0.2.0 — read its documentation.
Home › Survival › Survival estimators
Each subject's survival at given times: lifelines' predict_survival_function.
public double[] PredictSurvivalFunction(ReadOnlySpan<double> design, ReadOnlySpan<int> strata, ReadOnlySpan<double> times)Parameters — design holds the subjects' covariates row-major. strata holds each subject's stratum when the fit was stratified, and is empty otherwise. times are the times to read at, or empty for the baseline's own.
Returns — row-major, one row per subject and one column per time: exp(−H) of the cumulative hazard.
Exceptions — ArgumentException when design is not a whole number of rows of finite values, or strata does not match the subjects or names a stratum the fit did not see, or is empty for a stratified fit, or a time is NaN.
Example — a subject at (2, 1) in the fit of the CoxSummary page.
using Lodestar.Survival;
double[] design = [1.0, 0.0, 2.0, 1.0, 1.5, 0.0, 3.0, 1.0, 2.5, 0.0,
0.5, 1.0, 2.0, 0.0, 1.0, 1.0, 3.5, 0.0, 0.5, 1.0];
double[] months = [12, 5, 20, 3, 15, 9, 8, 14, 2, 18];
bool[] died = [true, true, false, true, true, true, true, false, true, true];
CoxSummary fit = CoxProportionalHazards.Fit(design, months, died, featureCount: 2);
double[] survival = fit.PredictSurvivalFunction([2.0, 1.0], [], [5, 10]);
double atFive = Math.Round(survival[0], 6); // => 0.497554Remarks — the exponential of PredictCumulativeHazard, so it interpolates the same way.
Applies to — net10.0, netstandard2.0.
See also — CoxSummary, CoxBaseline.