Survival coxsummary predictsurvivalfunction - CyrilB1531/lodestar GitHub Wiki

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CoxSummary.PredictSurvivalFunction

Each subject's survival at given times: lifelines' predict_survival_function.

public double[] PredictSurvivalFunction(ReadOnlySpan<double> design, ReadOnlySpan<int> strata, ReadOnlySpan<double> times)

Parameters — design holds the subjects' covariates row-major. strata holds each subject's stratum when the fit was stratified, and is empty otherwise. times are the times to read at, or empty for the baseline's own.

Returns — row-major, one row per subject and one column per time: exp(−H) of the cumulative hazard.

Exceptions — ArgumentException when design is not a whole number of rows of finite values, or strata does not match the subjects or names a stratum the fit did not see, or is empty for a stratified fit, or a time is NaN.

Example — a subject at (2, 1) in the fit of the CoxSummary page.

using Lodestar.Survival;

double[] design = [1.0, 0.0, 2.0, 1.0, 1.5, 0.0, 3.0, 1.0, 2.5, 0.0,
                   0.5, 1.0, 2.0, 0.0, 1.0, 1.0, 3.5, 0.0, 0.5, 1.0];
double[] months = [12, 5, 20, 3, 15, 9, 8, 14, 2, 18];
bool[] died = [true, true, false, true, true, true, true, false, true, true];

CoxSummary fit = CoxProportionalHazards.Fit(design, months, died, featureCount: 2);
double[] survival = fit.PredictSurvivalFunction([2.0, 1.0], [], [5, 10]);
double atFive = Math.Round(survival[0], 6);   // => 0.497554

Remarks — the exponential of PredictCumulativeHazard, so it interpolates the same way.

Applies to — net10.0, netstandard2.0.

See also — CoxSummary, CoxBaseline.

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