dbm on Trillium - CoBrALab/documentation GitHub Wiki

Preprocess data

Data should be preprocessed before submission. e.g. syntstripN3

DBM requires ANTs and qbatch both of which are available as part of the cobralab module.

cobralab module

module load cobralab will load a stack of software including the perquisites for DBM.
This should be loaded before job submission, or can be loaded as part of a job submission script.

Sample job_submission_script.sh

#!/bin/bash

module load cobralab

export QBATCH_CHUNKSIZE=32


./modelbuild input.csv --walltime-linear 00:15:00 --walltime-nonlinear 00:20:00