dbm on Trillium - CoBrALab/documentation GitHub Wiki

Preprocess data

Data should be preprocessed before submission. For example, syntstripN3 can be used for preprocessing human MRI data

Note: for mouse data, follow this roadmap

DBM requires ANTs and qbatch both of which are available as part of the cobralab module.

cobralab module

module load cobralab will load a stack of software including the perquisites for DBM.
This should be loaded before job submission, or can be loaded as part of a job submission script.

Sample job_submission_script.sh

#!/bin/bash

module load cobralab

export QBATCH_CHUNKSIZE=32


./modelbuild input.csv --walltime-linear 00:15:00 --walltime-nonlinear 00:20:00