WIP

module loading

2025-09-22 due to a bug with module loading on Trillium the order of module loading is very important

module load StdEnv/2023
module load gcc/12.3
module load minc-toolkit
module load ants/2.6.1

minc-toolkit-extras need to be added to bin

Using qbatch for job submission

:>joblist.txt
for file in inputs/*.nii.gz; do
     output_file=$(basename ${file%.nii.gz})
    ./synthstrip_N3 $file output/$output_file >> joblist.txt
done