Getting started on Trillium - CoBrALab/documentation GitHub Wiki

Getting started

Sign up for a Digital Research Alliance of Canada account.

Trillium access requires opting-in. In your CCDB account Resources -> Access Systems -> Trillium -> I request access.

You'll need to set up Multifactor Authentication.

Give the Trillium Quickstart a read.

On first login make sure to run

trisetup

Then run this

ln -sf /project/rrg-mchakrav-ab/gdevenyi/quarantine/cobralab-bashrc ~/.bashrc

You must logout and login for this to take effect.

Software

CoBrALab

module load cobralab will load most software you need.

Access to scratch and project

You will find your scratch and project directories at ~/links/projects and ~/links/scratch

Trillium modules

Documentation on using modules provided by Compute Canada on the Trillium cluster is available here.

If you're looking for something specific, try module spider <name>

Python

Documentation is available on using uv to manage python software (available in cobralab module). See here.

Deformation Based Morphometry

Documentation for running DBM on Trillium is here.

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