Cantera 3.2.0 Changelog - Cantera/cantera GitHub Wiki

This list is organized by pull request and includes all changes since Cantera 3.1.0.

#1828 Fix SUNDIALS 7.x compatibility/library list checks
- 6e00275 Fix SUNDIALS 7.x compatibility/library list checks
#1831 Minor documentation updates
- 271b27d [Doc] Fix some formatting errors
- 697a34f [Doc] Correct limitations of PyPI packages
- 7c24ac7 [Doc] Update a few steps in the release checklist
- b7f0e7d [CI] Correct output directory for archived API docs
#1833 Remove deprecated code and update required dependency versions
- 8154e07 Bump version to 3.2.0a1
- 12f244d Delete code marked for removal after Cantera 3.1
- 5814fa2 Drop support for Python 3.8 and 3.9
- d0f084c [Numerics] Fix duplicate initialization of IdasIntegrator::m_linsol_m…
- 99da28b Drop support for SUNDIALS 3.x and 4.x
- 0ec9924 Drop support for {fmt} 6.x and 7.x
- b328752 Drop support for ruamel.yaml < 0.17.16
- 3de0273 Drop support for numpy<1.21
- 814383a [Doc] Update minimum Ubuntu/Debian/Visual Studio verisons
- 7e7d0cc Require .NET 8.x for .NET interface
- 1f2b19b Drop support for SCons 3.x
- 9332919 [CI] Fix missing 'packaging' module
- d78e057 [Doc] Remove obsolete "work in progress" admonition
- 3d0c126 [CI] Use OpenBLAS on Ubuntu runners
#1834 [C++] Explicitly define copy constructor for AnyBase
- 2e0d8ac [C++] Explicitly define copy constructor for AnyBase
#1837 Simplify Molar Mixture Properties
- 7eaff30 [base] Add Solution::adjacentName
- 5821d1d [thermo] Use common work vector
- edf49ce [thermo] Remove redundant enthalpy_mole methods
- b7051aa [thermo] Remove redundant entropy_mole methods
- ba0b9fc [thermo] Remove redundant cp_mole methods
- 55b6102 [thermo] Remove redundant gibbs_mole methods
- 37f3b61 [thermo] Remove redundant calcDensity code
- 390b665 [thermo] Improve exception handling
- 9aff622 [docs] Add missing doxygen decorators
- 53a2d7e [docs] Fix doxygen inconsistency
- 10d7754 Address review comments
#1840 [Python] Fix unordered SolutionArray append
- e647b9d [Python] Fix unordered SolutionArray append
#1835 Experimental clib from doxygen
- 2a43239 [SCons] Enable clib_experimental flag
- 8108067 [doxygen] Exclude clib_experimental paths
- 77f639d [sourcegen] Switch sourcegen utility to argparse
- 88b1c8f [sourcegen] Add option for CLib
- 55c22ad [sourcegen] Add YAML header configurations
- 73d29ad [sourcegen] Parse tagfile and add jinja templates
- 138bb1b [sourcegen] Get doxygen tag information
- 786d0e9 [sourcegen] Add doxygen tag lookup
- e290734 [sourcegen] Add CLib crosswalks and output
- 4b2387f [sourcegen] Generate headers via YAML
- b3114a6 [sourcegen] Annotated Func objects
- a815aa5 [sourcegen] Add YAML scaffolder for debugging
- 03c2fd8 [sourcegen] Generate CLib implementation files
- a912ed0 [sourcegen] Improve data flow and logger output
- 51f3c35 [sourcegen] Improve HeaderFileParser method names
- 82b476b [sourcegen] Improve location of constructors
- 7e8150c [sourcegen] Add common CLib definitions
- 23ae2e3 [sourcegen] Generate simple CLib getters/setters
- 1608f8c [sourcegen] Improve autodetection based on YAML input
- 1b75f53 [sourcegen] Improve setter/getter code generation
- 4da9f87 [sourcegen] Simplify recipes
- d672ef4 [sourcegen] Add remaining CLib scaffolders
- 155c014 [sourcegen] Simplify code and templates
- a9932ba [sourcegen] Add includes
- 5b4a17e [sourcegen] Add service methods
- bc06c69 [sourcegen] Add main CLib header
- 69bf4ce [sourcegen] Add verbosity option to sourcegen
- 7ed9065 [sourcegen] Improve YAML source generator
- e41ad69 [sourcegen] Improve CLib source generator
- 8950275 [sourcegen] Implement reserved CLib methods
- 3110b30 [sourcegen] Improve nomenclature and fix glitches
- bb41b2e [sourcegen] Document/simplify YAML specifications
- aff31f8 [sourcegen] Use xml.etree to parse XML
- d932756 [sourcegen] Add vector<shared_ptr> handling
- 0200eaf [sourcegen] Specify docstring as field
- b8a3fcc [sourcegen] Handle custom code
- f3dd336 [unittests] Add googletests for clib_experimental
- 5ac59ed [sourcegen] Improve type hinting
- 5c78f2f [sourcegen] Clarify output file name
- c426d30 [CI] Add clib_experimental tests to workflow
#1841 Ensure correct transport model in 1D set_initial_state
- 1e01988 [base] Add transportModel getter to Solution API
- 74d36c7 [1D] Ensure fromArray uses correct transportModel
- d95269e [Python] Replace legacy transport model setter
- 89e4e31 [SolutionArray] Preserve transport model
- 9c3a57c [unittests] Cover transport model updates
#1844 Replace non-functional Boost download URLs
- 37db019 [CI] Replace non-functional Boost download URLs
#1731 Enhance the PlasmaPhase to use the cross section data with an example of calculating the elastic collision energy loss rate
- 22641c0 [phase] make PlasmaPhase using collisions and add the method to set i…
- 0b7a3da [plasma] fix the documentation
- a5fb6eb [plasma] fix the isotropic electron energy distribustion
- d216c6d [test] add test_elastic_power_loss
- b2fd4a0 [plasma] fix the failed tests due to m_cs_interp
- ebab808 [plasma] add safe guard to prevent negative Te in updateElectronTempe…
- 3ea4cbe [plasma] improve performance of setParamaters and PlasmaPhase constru…
- f9fc196 [plasma] make changing reaction and rate update interpolated cross se…
- 573e43c [plasma] fix setIsotropicShapeFactor
#1836 Enable use of different Jacobian implementations with 1D solver
- b8612a7 [Numerics] Avoid having MultiJac inherit from BandMatrix
- bbdc006 [Numerics] Remove MultiJac argument from MultiNewton methods
- e94727b [Numerics] Move 1D Jacobian evaluation into OneDim
- 4bb7046 [Numerics] Make MultiJac an implementation of PreconditionerBase
- 118a49a [Numerics] Enable using AdaptivePreconditioner as OneDim linear solver
- a3b1765 [1D] Improve Jacobian by using better choice of perturbation size
- 020c690 Rename PreconditionerBase to SystemJacobian
- 63210c2 [Numerics] Create intermediate class for sparse Jacobians
- 8a863a5 [Numerics] Add EigenSparseDirectJacobian implementation
- 9fa3dda [Doc] Update preconditioner/Jacobian docs
- 74340f8 [Numerics] Make sparse Jacobian accessible from Python
- 2928a4e [Test] Avoid possible error overwriting existing file
- 5a8cd85 [1D] Fix accumulation of Jacobian stats
- 5f6cd17 [Test] Avoid spurious failures of TestFreeFlame.test_converge_adiabtic
- 3dc77c0 [1D] Make Jacobian perturbations configurable
- e383e7b [Test] Add tests for new 1D Jacobian options
- fdca602 Add missing docstrings for SystemJacobian methods
#1842 Autogenerated clib core objects
- fcca4f4 Ignore Fortran module interface files
- e72715c [sourcegen] Add Solution methods to clib-experimental
- c083ad0 [sourcegen] Add to clib thermo API
- 7a5114f [sourcegen] Add alternative array-getter
- 8ee276b [sourcegen] Update Kinetics clib API
- fa3926c [sourcegen] Update Transport clib API
- ec9de7c [sourcegen] Implement methods for specializations
- 17d4419 [mix] Make API usable by clib
- 80aa8a0 [sourcegen] Add API for MultiPhase
- 40ea1c4 [clib] Add ReactionCabinet
- e00d704 [sourcegen] Add clib Reaction API
- be67f33 [sourcegen] Implement default constructors
- 21ca5e1 [sourcegen] Add missing service methods
- eb8d659 Add IndexError that omits array name
- fb95f34 [sourcegen] Differentiate CFunc.uses cases
- 3194402 [sourcegen] Allow instantiation of other bases
- f684d85 [Kinetics] Add phase accessor
- df28364 [sourcegen] Add remaining functions
- 399d48d [sourcegen] Add to constructor logic
- e936e26 [sourcegen] Split accessor from constructor methods
- 384809f [sourcegen] Simplify interface
- ade965a [sourcegen] Align CLib APIs
- 549bb3f [unittest] Add/split clib-experimental tests
- e6f3e9d [sourcegen] Simplify orchestrate
#1850 [C++] Fix unsigned integer check in Solution.h
- dc01810 Fix unsigned integer check in Solution.h
- fd1a410 [C++] Extend IndexError's logic for empty arrays
#1851 Make IndexError consistent
- 0720efb [base] Make IndexError consistent
#1853 Fix E -> Ea in creating-mechanisms.md
- d095f70 [docs] Fix E -> Ea in creating-mechanisms.md
#1857 [C++] Provide const access to falloff rate parameters
- fce3183 [C++] Provide const access to falloff rate parameters
#1846 Sourcegen CLib edge cases
- d62b710 [kinetics] Add docstrings to ReactionPath
- 1a25513 [kinetics] Enhance ReactionPathDiagram API
- bf938fc [Python] Simplify ReactionPath API
- 288cb28 [sourcegen] Implement CLib variable getter
- b45ef91 [sourcegen] Implement CLib variable setters
- b05a566 [sourcegen] Add ReactionPathDiagram to CLib
- 5db3fd8 [sourcegen] Add Cantera constants to CLib
- d26f8db [sourcegen] Add logger implementation
- d25eea9 [unittests] Cover additional CLib cases
- a131160 [sourcegen] Update README.md
#1861 Fix CI broken by change in wheel name generated by setuptools
- 8c3f464 [CI] Update for change in wheel name generated by setuptools
#1848 Zerod connector nodes
- cd5c94b [zeroD] Implement Connector base class
- 8d69195 [zeroD] Implement ConnectorFactory
- 85444a8 [zeroD] Move newFlowDevice to ConnectorFactory
- c4de9d6 [zeroD] Move newWall to ConnectorFactory
- d6041f2 [clib] Switch to ConnectorCabinet
- ebd50e1 [zeroD] Add deprecations
- 36c1d1e [zeroD] Install Reactors when instantiating connectors
- e2659f1 [Python] Derive Wall/FlowDevice from ConnectorNode
- 55f7065 [zeroD] Add alternative Connector instantiations
- 3f9742d [unittests] Improve test-zeroD coverage
- ddc62da [clib] Add new Connector functions
- 2d1e7d0 [MATLAB] Use CLib connector functions
- f6f66d0 [clib] Remove obsolete functions
- 0f88eeb [sourcegen] Add Connector crosswalk
- f591e44 [zeroD] Remove ReactorSurface from wallGroup
- f3555d4 [zeroD] Deprecate Wall/FlowDevice factories
- 1263675 [Python] Clarifiy reactor content nomenclature
- a3eb9cd [samples] Add plt.show() to Python samples
#1862 Bump tj-actions/changed-files from 41 to 46 in /.github/workflows
- f2722da Bump tj-actions/changed-files from 41 to 46 in /.github/workflows
#1704 Update / Add High pressure transport
- 32dcbb6 initial work on transport updates
- 7a1ddc2 changed high pressure transport to mixture averaged and added new Chu…
- b1c1ed4 added a test, and fixed names for transport objects
- 42e582f working Chung method, bug fixes in Lucas method
- bd37d89 improvements to docstrings and comments
- 51b499f documentation updates
- ca266ef more documentation & reverted Takahashi method to original approach
- 39a8cf4 [Doc] Add LaTeX macro file for Doxygen
- dadacca first pass at review edits
- c5bfe15 more documentation updates
- c16b4b0 addressing comments, new sample added
- 7a71d34 updates for documentation of the Ely and Hanley conductivity implemen…
- 3cc5a85 detailed model description added for ely and hanley thermal conductivity
- 66f67e7 wrapped doxygen comment for thermal conductivity to 88 characters
- bcf40f5 [transport] fixed incorrect equation in binary diffusion coefficient …
- 02f6be8 [transport] removed mixture quantity structs and placed values as pri…
- fecd52e [transport] changed the chung name to high-pressure-Chung
- c1cdc04 [transport] added coding to get acentric factor from critical-propert…
- 3dd2e23 [transport] added new unit test, updated example, removed old unit te…
- 6183616 [transport] fixed bug in debye to SI conversion, minor formatting tweaks
- aabaa31 [transport] minor comment adjustments
- 8af61f9 [transport] limited ely/hanley methane correlation to 10,000 Kelvin
- c7d1033 [transport] change broken high-pressure test to use RK eos instead of…
- 07801e6 [transport] cleaned up ely and hanley conduction, cleaned up docs on …
- 276d352 [transport] prevent species that have a=0, b=0 from being used in the…
- 740c42f [transport] added new unit test and fixed some issues with unit test …
- 6e73e4d [transport] fixed whitespace issues
- f546c90 [transport] fixed unit test failure for transport_models_test, added …
- 16ed161 [transport] updated docs on high pressure transport models
- 65c057b [transport] added regression-type test for high pressure transport mo…
- 6a577e5 [transport] fixing formatting & removing unused files
- e178130 [transport] converted list to numpy array in sample
- edcc49f [transport] addressing review comments
- 1bf2474 [transport] pulled out takahashi correction factors into separate var…
- db89d70 [transport] added Chung transport to phases.md file
- b01c19f [transport] simplified docstrings for critical property methods
- 5b3b6cb [transport] added HighPressureGasTransportBase common base class
- 0a7614d [transport] minor capitalization change wilke->Wilke
- d460559 [transport] fixed incorrect virtual method
- addbfaa [transport] Formatting cleanup related to high-pressure transport
#1866 [docs] Add link to 3.1 C++ documentation
- acf3f0e [docs] Add link to 3.1 C++ documentation
#1665 Complete Unit Test Suite for the Matlab Toolbox - Pt.1
- c76dbfd [MATLAB] Added Tests for Kinetics Methods
- c3c5ad9 [MATLAB] Changed how coverage setter works for Interface
- 6f653f6 [MATLAB] Added test data folder to test paths
- 808f671 [MATLAB] Additional Kinetics tests
- e6ab006 [MATLAB] Fixed a problem with string length
- 8b8be9d [MATLAB] Moved copy/deleting temporary data files
- 652fc3b [MATLAB] Added tests for duplicate reactions
- 5fb9464 [MATLAB] Added Kinetics Repeability tests
- f1ffb4b [MATLAB] Moved constants to immutable properties
- add8f77 [MATLAB] Added/Removed files necessary/unnecessary
- 869ffa6 [MATLAB] Added undeclared tests
- 63e7e6f [MATLAB] Added invalid input tests
- 1380118 [MATLAB] Added Functor Tests
- b118cc4 [MATLAB] Added extra checks in class destructors
- 624d461 [MATLAB] Added Equilibrium Tests
- 4f03f02 [MATLAB] Fixed Issues with Mixture Class
- 3cce5b6 [MATLAB] Added transportModel property to Solution
- f6fe6bd [MATLAB] Added Transport Tests
- e699bee [MATLAB] Modified several paths for Windows
- 83efdfa [MATLAB] Modified Readme to Account for BLAS
- a797e73 [MATLAB]Set LD_PRELOAD for STDCXX/OpenBLAS/LAPACK
- 1db0eeb [MATLAB] Added code coverage to CI
- cd394b9 [MATLAB] Renamed ImportPhase
- 7b12f9a [MATLAB] Added script to run all MATLAB tests
- 3f2057c [MATLAB] Updated readme
#1876 Fix ck2yaml handling of unnamed surfaces
- 84831a9 [Input] Fix ck2yaml handling of unnamed surfaces
#1858 Fix isotropic electron energy distribution expression
- e19ac68 [plasma] fix c2 and make shape factor default value one
#1863 Experimental CLib oneD API
- fe24271 [sourcegen] Prepare alternate prefix for specializations
- 5883f1b [sourcegen] Implement alternative class prefix
- d8a7835 [sourcegen] Make output file templates intuitive
- f20a0a0 [sourcegen] Add oneD domains
- d185f1d [sourcegen] Add oneD Sim1D
- d91a12e [oneD] Add newBoundary1D/newFlow1D
- d15cca3 [oneD] Add newSim1D
- 4c37a91 [oneD] Add setupGrid alternatives
- 3e11269 [sourcegen] Implement missing crosswalks
- b4656c1 [sourcegen] Improve naming
- 1f79100 [sourcegen] Only use typing-extension if needed
- 5a591f8 [unit-tests] Add 1D tests to experimental CLib
- 5df1765 [docs] Add optional dependency
- e842668 [sourcegen] Enforce encoding when reading tag files
- 873f6ad [CI] Test CLib on multiple OSs
- 1367c9f [Python] Use newSim1D in Python API
#1864 Update ReactorSurface / generalize ReactorBase
- 97e7c72 [zeroD] Derive ReactorSurface from ReactorBase
- 609a23f [zeroD] Add ReactorSurface to ReactorFactory
- 854109b [zeroD] Unify addSensitivityReaction
- 5730ade [clib] Remove ReactorSurface
- 445ee80 [MATLAB] Update ReactorSurface methods
- 817c1c3 [.NET] Adopt ReactorSurface changes
- 2005ff7 [Python] Update ReactorSurface API
- 119af47 [zeroD] Deprecate setKinetics
- 84b4130 [zeroD] Move volume setter to Reactor
- 02bee1f [zeroD] Disable unphysical ReactorSurface methods
- 49d788b [zeroD] Fix docstrings
- b85c698 [zeroD] Avoid unnecessary updates
- 080abd8 [zeroD] Avoid shadowed variables/methods
- 75aa314 [zeroD] Reservoir does not need to be synchronized
- 6bf14c5 [zeroD] Require overrides of syncState
- 0eb7f94 [zeroD] Allow for bypassing of intEnergy_mass
#1879 Add sourcegen documentation to Sphinx
- d06016a [sourcegen] Improve YAML source generator
- e6889d6 [sphinx] Stubs for experimental API documentation
- a038904 [sphinx] Add development stubs
- 5d245c7 [sphinx] Start moving sourcegen documentation
- 05efb03 [sphinx] Move .NET specific sourcegen information
- 2af8b83 [sphinx] Add CLib documentation details
- d86f8bc [sphinx] Improve structure of sourcegen docs
- 7c49cc7 [sphinx] Add YAML source generator docs
- 432ab67 [sphinx] Add sourcegen details
- 2b9bfcb [sphinx] Wrap up sourcegen documentation
- 332f58d [sphinx] Improve 'Reference' stubs etc.
- 121b282 [sphinx] Address reviewer comments
- 4d1978e [sphinx] Address reviews (cont'd)
#1875 Add Zizmor linting and address findings
- 86ae40e [CI] Address findings from zizmor
- 08b22f8 [CI] Add zizmor job running on PRs and main
- 7859a01 Pin actions to a commit SHA
- 6eb94ec Add dependabot to keep actions up-to-date
- 1eafde7 Week -> month
- 9eac189 Bump setup-uv
- 98c1de4 Group dependabot updates
- bf57032 Document best practices for workflows
- 64b19dc Add continuous integration page to toctree
#1885 Bump the actions group with 2 updates
- 932f899 Bump the actions group with 2 updates
#1878 Experimental CLib zeroD API
- 0f7ef4b [zeroD] Implement newReactorNet function
- 4446f76 [zeroD] Ensure API uses smart pointers
- 4cbf33c [zeroD] Make newReactor functions more consistent
- 8fa970b [zeroD] Used shared_ptr
- 4c328ea [sourcegen] Add reactors to experimental clib
- da0a2b0 [sourcegen] Add connectors to experimental clib
- 93ed13c [sourcegen] Add reactor net to experimental clib
- 69a77ed [unittests] Add zeroD to test-clib-experimental
- 4bfe584 [Python] Switch to newReactorNet
- 1b5a4e2 [unittest] Avoid building ReactorNet incrementally
- 8b5ad65 [clib] Enable suppress_deprecation_warnings
- 27babd8 [samples] Propagate API updates
- 2ff5662 [zeroD] Address review comments
#1854 Reverse reaction (super-elastic) electron collision reaction
- c736ea4 [Kinetics] Handle reversibility in base Kinetics object
- eabaa21 [Kinetics] Move rate evaluators up to base Kinetics object
- b8db8f8 [Kinetics] Add ability to modify forward/reverse rate constants
- 5a586b6 [kinetics] enable reverse ElectronCollisionPlasmaRate
- 8341e7d [kinetics] implement the super-elastic rate
- 8612d4d [test] update plasma reaction to reversible
- ef3a813 [kinetics] make plasma reaction rate coefficient calculation consistent
- f501f3f [kinetics] add test for electron collision plasma reaction
- 3387116 [kinetics] update the doc for ECPR
- f6fdbd6 [kinetics] prevent overwrite kr for irreversible case
#1886 Bump version to 3.2.0a2
- 439ed3e Bump version number
#1890 Update SConscript
- d96b7f5 Update SConscript
#1891 Update post-merge-tests.yml
- ddd45aa Update post-merge-tests.yml
#1884 Add announcement banner
- 9baa7bc [sphinx] Add announcement banner
- 0f2ea8c [sphinx] Permanently fix year in footer
- 5f094be [sphinx] Adjust padding/colors
#1888 Experimental clib .NET
- ce553d3 [sourcegen] Eliminate clib/_Config.py
- 85cea13 [sourcegen] Eliminate csharp/_Config.py
- 6cbd63d [sourcegen] Split HeaderParser from clib
- a0a740a [sourcegen] Consolidate header input location
- 6144895 [sourcegen] CSharpSourceGenerator uses new clib
- 96c7187 [sourcegen] Tweak template file names
- 1345be5 [sourcegen] Use template files for csharp
- 3a91c73 [sourcegen] Fix noop destructor
- 2bd50a9 [sourcegen] Remove legacy setter implementation
- eba0fc4 [sourcegen] Fix custom code
- 63eb550 [sourcegen] Improve nomenclature
- 23fe3cf [sourcegen] Clarify CFunc parsing
- 8479523 [sourcegen] Clarify YAML field name
- ba86b0f [.NET] Propagate updates
- de22942 [clib] Add experimental CLib demo
- 6c9872e [scons] Add experimental CLib demo to tests
- 80e8a6a [docs] Add experimental CLib demo to docs
- 7cc4692 [CI] Preserve doxygen xml for dotnet
- 85b22a9 [docs] Update sourcegen documentation.
- aa1c85a [CI] Add clib_experimental test variant
- 949f82c [dotnet] Fix dotnet clean
- 3110fd1 [sphinx] Remove outdated comment
#1893 Make sourcegen more pythonic
- 177d62b [sourcegen] Introduce src folder
- febbf8c [sourcegen] Streamline dataclasses
- fe7e109 [sourcegen] Finalized folder structure
- 5ac3e44 Update .gitignore
- 4cc0646 [sourcegen] Make sourcegen a CLI
- 7ffb846 [sourcegen] Fix nomenclature
- b3a8adc [sourcegen] Make sourcegen installation flexible
- 981aa43 [docs] Update sourcegen documentation
- 080f93e [sourcegen] Use hatchling
- 0d13c40 [CI] Install sourcegen
- e87aa06 [docs] Point out virtual environment
#1894 Fix handles in .NET interface
- f00ecc4 [.NET] Fix marshalling of handles to native Cantera objects
- c6fb193 [.NET] Use Spans instead of pointers in P/Invoke signatures
- 11a936e [.NET] Tweaks to sourcegen
- 1cdda69 [.NET] Update docs to reflect dropping .NET Standard 2.0
- bcba69a [.NET] Use manually-marshalled UTF-8 strings with LogCallback.
- 5bbf58b Flip QT_AUTOBRIEF setting following Doxygen bug being fixed in v1.14.0
#1899 Fix layout of multi_diff_coeffs matrix in Python
- 917950a [Cython/Transport] Fix layout of multi_diff_coeffs matrix
#1900 Bump astral-sh/setup-uv from 6.0.1 to 6.1.0 in the actions group
- 62fa673 Bump astral-sh/setup-uv from 6.0.1 to 6.1.0 in the actions group
#1897 Address papercuts in generated CLib
- 42b4827 [sourcegen] CLib return cross-walk
- 7f7a656 [sourcegen] CLib parameter crosswalk
- c667da8 [sourcegen] Simplify crosswalks
- 94474de [sourcegen] Improve logging
- d42cbc5 [sourcegen] Improve debugging output
- 37786a2 [sourcegen] Improve CLib crosswalks
- 404987e [sourcegen] Use structured YAML for custom code
- 5678dcc [sourcegen] Simplify templates
- 4f4bd77 [sourcegen] Eliminate Func object
- 699b6dc [sourcegen] Enforce 32-bit C type
- d6d5880 [SCons/sourcegen] Implement SConscript for clib
- 751c408 [unittests] Update test-clib-experimental
- 657afbb [samples] Update test-clib-experimental-demo
- d4c5f43 [Doxygen] Add experimental CLib
- 0430b80 [SCons] Do not build both clibs
- d75a329 [sourcegen] Drop '3' from file names
- 700c870 [sourcegen] Drop '3' from function names
- 66d7ac8 [sourcegen] Make nomenclature more consistent
- 8d88855 [unittests/samples] Account for skipped '3'
- 8354469 [clib] Shorten interfaces/clib path
- 43a27a7 [numerics] Prevent clash in C#
- 435e1a8 [sourcegen] Simplify header/CLib crosswalks
- a70c3b6 [.NET/sourcegen] Eliminate '3' from CLib functions
- b45c0a9 [sourcegen/doc] Use single tag file
- 8fb3ea6 [doc] Update sourcegen documentation
- 51c014c [SCons/docs] Final cleanup
- b6e7a0a [CI] Update runners
- be39ece [SCons] Update CLib nomenclature
- 157ff67 [docs] Update CLib nomenclature
- a9f9b2e [unittests] Use int32_t where applicable
- f952df7 [CI] Switch default to generated CLib
- 268df4e [CLib] Deprecate legacy CLib
- 6cd5e2b [CLib] Fix problematic header guards
- cd6dab3 [SCons] Avoid temporary CLib folder names
- 34efe41 [sourcegen] Rename CFunc to Func
- 32cfbd7 Address review comments / final edits
#1901 Switch to AUTHORS.md
- 36c0524 Switch to AUTHORS.md
- beeb860 [SCons] Fix #1871
- e798639 Reformat AUTHORS.md
- 0ae673e Added missing GitHub tags
#1903 Fix CLib Doxygen Rendering
- dd53c24 [sourcegen] Doxygen tags do not work as expected
- bf88bd0 [sourcegen] Func.implements -> Func.wraps
- 9b90565 [sourcegen] Recipe.implements -> Recipe.wraps
- 49bbbe7 [sourcegen] Fix direction of 'Len' parameter
- 682ff04 [sourcegen] Resolve rendering
- f3bef80 [sourcegen] Escape Cantera in Doxygen
- b3615cf [sphinx] Update documentation
- 380285c [doxygen] Improve group labels
- 929c3d6 [CI] Update post-merge-tests
#1904 Simplify logger setup
- e52efc7 Make logging global rather than thread-specific
- b308592 Fix ownership handling of Logger objects
#1908 Resolve some CI/build issues
- 2597dcf [CI] Prevent builds using broken Cython version
- b32c669 [CI] Replace windows-2019 runners with windows-2025
- 5432851 Fix warnings about unused SUNDIALS callbacks
- 52e63fe Fix warnings about license classifiers being deprecated
#1906 .NET Interface: Interop improvements
- 665cde3 [.NET] Normalize handling of sourcegen files in Cantera.csproj
- b495f56 [.NET] Return to string parameters in LogCallback
- 5cb1227 [sourcegen] Simplify CSharpSourceGenerator a bit
- 9b7dda7 [.NET] Use automatic checking of return codes at the interop boundary
- 8d6876b [.NET] Scaffold GetString wrapper methods in LibCantera
- 539b6f2 [.NET] Scaffold wrappers for functions that get or set arrays
- 40b489c [.NET] Prefer spans of handles over plain ints where possible
- b8016b5 [.NET] Simplify Exceptions
- 1a8f1b0 [.NET] Use module initializer instead of static constructor
- bbc1429 [.NET] Swap dictionaries for switch expr’s in methods with ThermoPair
- 7ec061f [.NET] Enable additional code analyzers and apply fixes or suppressions
- a09a928 [.NET] Upgrade Cantera.Tests to xUnit.net v3
- b2beba2 [.NET] Small improvements and clarifications in CSharpSourceGenerator
- 0d5229e [.NET] Add additional test coverage of the ThermoPhase class
#1909 Fix Windows MSVC job in CI
- 305d5a1 [CI] Fix Windows MSVC job (#1909)
#1913 Workaround for optimization bug in MSVC 17.14.36203.30
- 0158dd7 [CI] Workaround for optimization bug in MSVC 17.14.36203.30
#1914 Update zizmor and remove skip config for pp in the wheel
- 56d5bd5 [CI] Update zizmor to use the official action
- 4b7a3d6 [Wheel] Remove unnecessary pp exclusion
#1915 Fix building sdist into wheels and avoid broken Cython
- fbed7d9 [Cython] Enforce cython cannot be v3.1.2
- f7fc61b [Sdist] Template requirements versions
- dee0d51 [CI] Fix some of the post-merge tests
#1917 Fix reaction balance check for elements with negative abundances
- 097ad33 [Kinetics] Fix reaction balance check for negative element abundances
- b555dc4 [Test] Count pytest errors as failures in test tsummary
- a79f7ca [Thermo] Fix use of uninitialized value in HMWSoln
#1919 Fix broken template variables building sdist
- 6a71ee7 [Sdist] Fix broken template variables in pyproject.toml.in
#1907 Steady-state reactor network solver
- 2f9bf30 [Numerics] Extract base class for general steady-state systems
- 23ca32b [1D] Precompute global index to component mapping
- 6dad66d [Test] Avoid spurious failures in ImpingJet test case
- 5e14879 [Numerics] Move hybrid steady/timestepping into SteadyStateSystem
- 5c832d1 [Reactor] First working example of steady reactor network solver
- 639bbba [Doc] Add some notes about using AddressSanitizer
- a379d24 [Reactor] Add interface for reactor-specific steady-state constraints
- 5ac340e [Reactor] Define upper/lower bounds for remaining reactor types
- 8f0ae85 [Reactor] Expand docs for steady-state solver interface
- 02913a0 [Numerics] Make MultiNewton robust to some factorization/evaluation f…
- b0f9eb7 [Reactor] Implement higher debug levels for ReactorNet::solveSteady
- 03a7468 [Reactor/Test] Add tests for steady solver
- ae80509 [Doc] Fix missing method group end in ReactorNet
- 64fd82f [Reactor Add more extensive tests for steady-state solver
- 11d5f02 [Reactor] Handle constant temperature case in solveSteady
- eafd8d2 [Reactor] Use max timestep count from ReactorNet in steady solver
- bc9d22b [Reactor/Examples] Use solve_steady in applicable examples
- 16d2c5b [Reactor] Disable steady solver when reacting surfaces are present
- 83612ae [Reactor] Implement resetBadValues to improve steady-state convergence
- fb4c553 [Reactor/1D] Improve test coverage of steady-state solver
#1918 Add sundials mpi check
- 4aadbe6 [SCons] Enable mpifort
- 44a62bd [SCons] Check for SUNDIALS_MPI_ENABLED
- bf5b8e0 [CI] Fix failures for Sundials with MPI enabled
- 284a989 [CI] Avoid Python 3.13.5 on macOS 13
#1920 Bump the actions group with 2 updates
- b105c52 Bump the actions group with 2 updates
#1881 Complete Unit Test Suite for the Matlab Toolbox - Pt.2
- 88eca7a [MATLAB] Added extra checks in class destructors
- e84762a [MATLAB] Fixed issues with Reactor and ReactorNet
- 8da4bae [MATLAB] Added Reactor unit tests
- 2a5a1da [MATLAB] Added Wall tests
- 1840662 [MATLAB] Added PureFluid Tests
- c460692 [MATLAB] Fixed problems with pure fluid tests
- c0d9515 [MATLAB] Added backend for Water type object
- 55bdcc2 [MATLAB] Added all PureFluid test cases
- c0ad07a [MATLAB] Changed how input parameters are added
- 5defb4e [MATLAB] Fixed issues and typos for ReactorNet
- bab7a28 [MATLAB] Added FlowDevice tests
- fb807a3 [MATLAB] Changed how inputParser is called
- 9712f85 [MATLAB] Removed unncessary checks when setting
- e8f6976 [MATLAB] Added missing error code for ctFunc
- d03561c [MATLAB] Interface Now Inherits From Solution
- 2e03fbd [MATLAB] Added well stirred reactor test
- 0f03dd8 [MATLAB] Added Constant Pressure Reactor test
- 895926c [MATLAB] Replaced inputParsers with arguments
- de88256 [MATLAB] Tear down methods will delete ct objects
- f4416a6 [MATLAB] Added FlowReactor tests
- 4228835 [MATLAB] ReactorSurface Inherit From Reactor
- 510889f [MATLAB] Fixed Connector Class Issues
- e0975c4 [MATLAB] Fixed FlowDevice and Reactor Tests
- 745ab19 [MATLAB] Moved Test YAML Files to Data
- fe4b2a4 [MATLAB] Changed description of Interface Constructor
- 3d6629b [MATLAB] No longer move test data files
- 16f76dd [MATLAB] Removed add reactor from ReactorNet
- 27c6edd [MATLAB] Moved check reactor states out of integrate
- f28f442 [MATLAB] Interface class now call its superclass
- 61df74e [MATLAB] Changed error handling for Water
- 8087648 [MATLAB] Removed unncessary object ID checks
- 0bac329 [MATLAB] Fixed some docstrings and typos
- 5631e20 [MATLAB] Removed dt property from ReactorNet
- 445e8b1 [MATLAB] Consolidated two data files to ch4_minimal
- 0eaf006 [MATLAB] Removed all unnecessary variable clears
- 94b457d [MATLAB] Separated normalized and unnormalized coverage setter
- 887abf8 [MATLAB] Fixed typos
- f62002d [MATLAB] Fixed ConstPressureReactor Tests
- 6588d44 [MATLAB] Added docstrings for several test classes
- 275ac55 [MATLAB] Added descriptions for skipped tests
- 7afebd9 [MATLAB] Created Common Base Class for Tests
- 0e55a49 [MATLAB] Removed Unnecessary Tests in ctTestFlowReactor2
#1923 Update duplicate reactions when serializing
- 726dabc [Input/Kinetics] Update duplicate reactions when serializing
#1931 Enforce utf8 encoding in sourcegen
- 44225f3 [sourcegen] Enforce utf8 encoding
- f22643e [CI] Disable macos-13 with Python 3.13
#1930 Add Soret model for mixture-averaged diffusion
- 0a794e2 Add Soret model for mixture-averaged diffusion
- 897686f [C++] add m_spwork2 to MixTransport
- 98ec8d1 Soret model: address review comments
#1934 Bump astral-sh/setup-uv from 6.3.1 to 6.4.3 in the actions group
- f8296c6 Bump astral-sh/setup-uv from 6.3.1 to 6.4.3 in the actions group
#1936 Update affiliation in AUTHORS.md
- 09a9847 Update affiliation in AUTHORS.md
#1933 Enable mpicc selection via $CC value
- 1d63b0c [SCons] Enable mpicc selection via $CC value
#1939 Tweak dependency formatting
- af8298c [doc] Tweak dependency formatting
#1945 Fix doc links
- 552ee36 [Doc] Fix links from Doxygen to Sphinx
- 018c9c9 Fix link to compilation instructions
#1944 Fix inlet initialization in continuous reactor example
- 25103c9 [Examples] Fix inlet initialization in continuous reactor example
#1948 Make imports of external Python modules private
- c7c3d39 [Python] Remove obsolete setting of PYTHON_CMD
- 1fe9fa0 [Python] Make imports of external modules private
- 4104049 [Python] Add test to check for namespace cleanliness
- 376bf74 [Python] Eliminate star imports in pure-Python files
#1946 Fix warnings printed in Python test suite
- 0641838 [Input] Prevent warning about third-body duplicates when serializing
- 33f899a [Numerics] Suppress SUNDIALS warning messages
- ff6a0c2 [Kinetics] Avoid division by 0 in BlowersMaselRate
#1887 Two-Term Boltzmann Equation solver
- fd31fd5 Initial implementation of two-term approximation EEDF solver
- 4696652 Restore elastic power loss after adding EEDF solver
- 2c3b7f1 Updates to EEDF solver
- db955bd Delete unnecessary setDiscretizedElectronEnergyDist method
- fe5cafc only updateElectronTemperatureFromEDist in twoTerm when EEDF is valid
- 3776098 Removed redundant normalized elastic electron energy loss rate calcs
- cde8a63 All tests passed, and reactor and solver still work
- 99dc3d0 added EEDF solver test to python test suite
- 154aa92 writelog cleanup
- d7e4883 Ensure proper initialization in ElectronCollisionPlasma modifyRateCon…
- 8a9cbb1 Add nanosecond pulse plasma example
- 1088ca5 Remove unused variables in EEDFTwoTermApproximation
- e9bb99f added doxygen style comments to ElectronCollisionPlasmaRate, supresse…
- f549ac6 fixed docstringstring in plasmatest and removed whitespace
- 662bb43 [Plasma] Fix caching of interpolated cross sections
- ef19794 [Kinetics] Avoid unnecessary reinitialization of collisions
- c116f6e [Plasma] Use consistent YAML formatting for tabulated cross-sections
- bced704 [Plasma] Consolidate initialization of collisions from plasma rate
- 09a6b1e [Plasma] Use ElectronCollisionPlasmaRate for all collisions
- 2937b47 Cleanup of PlasmaPhase and EEDFTwoTerm solver
- b7d1d21 [Reactor] Deprecate intEnergy_mass
- 63fd4b6 [CI] Automatically check out linked example-data PRs
- 9f8c65c [Plasma] Allow marked duplicate "effective" collisions
- c269ec6 [Kinetics] Remove unnecessary new functions
- bd29131 Make checkFinite input const
- 58856eb [Plasma] Cleanup of EEDF solver and PlasmaPhase classes
- 9a702bb Update authors list
- 708fa79 addressed comments on PR
- bdb3274 removed TwoTermOpt class and cited Phelps database on plasma-eedf exa…
#1949 Fix flowcontroller visualisation (#1938)
- 2c5b843 Fix flowcontroller visualisation (#1938)
#1952 Add post-merge test to track sporadic failures
- 3382e32 [CI] Add post-merge test to track #1916
#1953 Update example_data submodule with plasma mechanisms
- 3375822 [Examples] Update example_data submodule with plasma mechanisms
#1951 Consolidate Gaussian1 functors
- 9aa6e2b [samples] Do not use kebab-case in sample name
- 31508a8 [samples] Do not use CamelCase in sample names
- 45185f4 [samples] Use Gaussian1 functor where applicable
- be094a4 [samples] Update file name from submodule
- badd326 [Sphinx] Fix references for renamed samples
- 794cc53 [Examples] Update example_data submodule
#1955 Fix synchronization of Reservoir state
- 4b6712f [Reactor] Fix synchronization of Reservoir state
#1956 Fix SolutionArray.read_csv when using Pandas 3.x
- a0f9205 [Python] Fix SolutionArray.from_csv for Pandas 3.0
- f9114ec [CI] Update post-merge tests
#1960 Update Pint version check
- 38fbee0 [Test] Update Pint version check
#1958 Update C++ transport docs
- a0ee011 [Doc] Fix description of binary diffusion coefficient fits
- cc0c6ae [Doc] Correct erroneous description of array structures
- aa186eb [Doc] Clean up docstrings for "get flux" methods
- 9f394a0 [Doc] Harmonize representation of units in Transport classes
- 639240c [Doc] Improve consistency and formatting of Transport math expressions
- a1a0a2a [Doc] Describe preferred style for notating units
- 04a4a91 [Doc] Make references to number of species consistent in Transport cl…
- 1daaf9b [Doc] Update code-like formatting in Transport docs
- b57e643 [Doc] Elaborate on brief/detailed Doxygen docstrings
#1961 Fix and simplify options for solving electric field/ion diffusion
- 4fbbb16 [1D] Fix and simplify options for solving electric field/ion diffusion
#1963 Bump the actions group with 8 updates
- 4f2bd17 Bump the actions group with 8 updates
- 8ebb411 [CI] Ensure only one upload of Doxygen artifact
#1962 Add post-merge CI jobs for dev versions of dependencies
- 593f6ec Use new location for HighFive
- bb5f5a8 [SCons] Fix setting hdf5 library name with system HighFive
- 87333f4 [CI] Add post-merge tests for build dependencies
- fd4db0b [CI] Add Docker-based Debian tests
- 0faa293 [SCons] Fix RPATH config for Homebrew GCC
- 5284fb4 [SCons] Fix error message when system_sundials=y not satisfied
- e9fa595 [CI] Test with Homebrew GCC
#1965 Fix handling of falloff reactions with extra apparent third body
- 71ffab4 [Input] Fix handling of falloff reactions with extra apparent third body
#1966 Deprecate ReactorBase::addThermo
- 4cac7ac [Reactor] deprecate ReactorBase::addThermo
#1964 feat: pickling of SolutionArray objects (fixes #543)
- 54285bd feat: pickling of SolutionArray objects (fixes #543)
- 9622b88 test: add test for SolutionArray objects
- ffb134d style: fix whitespace linter errors
- 7fcd38e style: fix whitespace linter errors (2/2)
- 7b7a538 style: implement feedback on pickling SolutionArrays (#1964)
- 304136c [SolutionArray] Enable appending to empty file
- aa8a385 [Python] Some edits on SolutionArray pickling
#1911 Fix MATLAB interface samples
- bdcf4f8 [MATLAB] Fixed Sim1D.display
- 90d4dc0 [MATLAB] add correct units for axis for periodic_cstr.m sample
- ed52e80 [MATLAB] Added massDensity property to ThermoPhase
- be5846a [MATLAB] Fixed some samples and added try catch to test_examples.m
- eda1ba4 [MATLAB] Changed how search paths are set
- 7e3c29f [MATLAB] Changed CI workflow to account for change
- 9635173 [MATLAB] Removed ctRoot
- 8394b16 [MATLAB] Added checks for Func1 class destructor
- 6556ca0 [MATLAB] Fixed multicomponent transport test
- 028b457 [MATLAB] Changed installation instructions
- 44b4911 [MATLAB] Changed how ctPaths work
- 5e5d170 [MATLAB] Incorporated sample tests into CI
- a66e2f8 [MATLAB] Changed installation guide and docs
- 26c34ce [MATLAB] Removed savepath behavior from ctPaths
- 04ac6fb [MATLAB] Renamed Sim1D.display to Sim1D.show
- ce94581 [MATLAB] Fixed issues with ignition examples
- d98b091 [MATLAB] Removed the pre-test set up steps
- 2e01594 Update authors list
#1967 Fix 1D flame auto-solve after restoring from Pandas
- 57b1584 [Python/1D] Fix auto-solve after restoring from Pandas
#1959 Deprecate LatticePhase and LatticeSolidPhase
- b3056bf [Doc] Replace use of 'lattice' in YAML surface example
- 603cb60 [Thermo] Deprecate LatticePhase and LatticeSolidPhase
#1969 Correct heat transfer coefficient unit in docstring
- ba8d45c Correct heat transfer coefficient unit in docstring
#1968 Bump version to 3.2.0a3
- 72d21e1 Bump version to 3.2.0a3
- 0c561b6 Fix miscellaneous documentation typos
#1972 Indicate compatibility with Python 3.14
- d09da96 [SCons] Indicate compatibility with Python 3.14
#1970 Use unicode superscript in Python docstrings / tweak pickle
- 28ed297 [Python] Address reviewer comments from #1964
- 0259280 [Python] Check infile when creating Solution
- 19f9c1a [unittest] Check SolutionArray parameters
- ca88f08 [Python] Use unicode superscripts in docstrings
#1973 Update minimum CMake version in generated build scripts
- 1c0b7f4 Update minimum CMake version for generated build scripts
- 33e5afc Eliminate use of deprecated method in C++ combustor example
#1975 Fix installation path for generated clib sample
- a68b277 [SCons] Fix installation path for generated clib sample
#1979 Fix introspection of key names in AnyMap generated from Python
- ccb9c11 Fix introspection of key names in AnyMap generated from Python
#1977 Fix installation of generated CLib headers
- b801cc3 [SCons] Fix installation of generated CLib headers
#1978 Eliminate redundancy in Arrhenius / ArrheniusRate
- 82006bc [Python] Fix modifying rates using Arrhenius objects
- 72fbf27 [Python] Replace and deprecate class Arrhenius
#1981 Restore ThermoPhase state after error setting state
- 69e974c [CI] Fix use of undefined variables in workflows
- 30495c4 [Thermo] Add functions to save/restore state excluding composition
- 5cdf819 [Thermo] Remove unnecessary setState overrides
- e6c2c10 [Thermo] Check for negative pressure in VPStandardStateTP
- c6ca2ca [Thermo] Revert to previous state after error setting thermo state
#1982 Update sdist and cibuildwheel configuration
- f598051 [Sdist/Wheel] Bump Ninja to 1.13 or greater
- ceee762 [cibuildwheel] Use the uv-backed build backend for speed
- 793008d [cibuildwheel] Only build 64-bit archs
- 5513c89 [cibuildwheel] Skip free-threading Python on Windows
- 5c0df3e [Sdist/Wheel] Update dependency versions
- 1b524bc [Sdist/wheel] Add Python 3.14 classifier
- 3e83530 Bump to 3.2.0a4
#1983 Add input file/example disclaimers
- 9978017 [docs] Fix example_data paths
- 68cf9f5 [doc] Add disclaimer for example input files
- 1c09f9f [doc] Add disclaimer for example files
- d68b4d8 [SCons] Install data/README.md
- 511f6b8 [docs] Simplify examples landing page
#1986 Refactor CLib Cabinet
- b9eb205 [sourcegen] Remove obsolete reserved functions
- f6d64b9 [clib] Copy Cabinet.h
- 83e20aa [docs] Remove obsolete references
- b76abd8 [clib] Remove obsolete Cabinet code
- cdeccf4 [sourcegen] Update recipes
- 33aab53 [sourcegen] Remove unused code
- f861291 [CI] Update clib-test
- 7d85643 [clib] Drop 'generated' from CLib samples
- 36bd072 [clib] Remove 'generated' from CLib tests
- 33e5dd8 [sourcegen] Use j2 suffix for Jinja2 templates
#1984 Deprecate legacy convenience headers
- bda6138 [core] Deprecate old convenience headers
- 23ef9d6 [core] Add Species/Reaction to core.h
- 7fa6782 [CI] Update headers for test
- d76fa76 [CI] Update headers for test_problems
- 99550d0 [docs] Mark deprecated convenience headers
#1987 Clib paper cuts
- 65f1ba4 [sourcegen] Bump version to match 3.2.0a4
- dda6331 [clib] Add sim1D_restore
- fa15cde Rename addDirectory->addDataDirectory
#1990 Bump the actions group with 8 updates
- 96f98af Bump the actions group with 8 updates
#1868 Matlab-to-Clib Interface Overhaul
- afb22bc [MATLAB]Added automated scripts to build interface
- c6e0656 [MATLAB] Updated how array data is passed between
- 5af200c [MATLAB] Modified several class methods to be
- 60b3922 [MATLAB] Reworked a few Utility methods
- cf22548 [MATLAB] Reworked the scripts to build the Cantera
- b481eea [MATLAB] Simplified the setup and teardown methods
- 24734d1 [MATLAB] Modified the CI for the new C++ interface
- a95bfd4 [MATLAB] Removed ctPaths
- 2364eac [MATLAB] MATLAB interface loads from the correct
- 05bf7d8 [MATLAB] runMatlabInterfaceTests now searches for
- d7f7a0a [MATLAB] Updated readme, docstrings, and gitignore
#1989 Adding another readable unit m^3
- 57f797c Adding another readable unit m^3
- e54e335 m^3 generalization
#1921 Clone Solution objects used by Reactor / ReactorSurface
- cd81b00 [Kinetics] Make Kinetics::parameters() const
- cca3fd2 [Solution] Add clone method covering ThermoPhase and Kinetics
- 5cac37a [Solution] Handle cloning of surface phases and InterfaceKinetics
- b0866c2 [Solution] Handle cloning of Transport objects
- 1ac37c9 [SCons] Make sure sourcegen reruns after changes
- e2ee2a9 [Reactor] Allow surfaces to be adjacent to multiple reactors
- 604c305 [Reactor] Allow cloning of some but not all adjacent phases
- f40e65a [Kinetics] Serialize rate multipliers
- 6e02ab2 [Numerics] Improve handling of eval failure in dampStep
- 1475e36 [Reactor] Automatically clone Solution objects
- c7a4cd6 [Python] Avoid errors from wrapping same C++ Solution twice
- 1c913b9 [Reactor] Make cloning of Solution objects optional
- 443c32a [Input/Kinetics] Fix automatic duplicate labeling
- a3110b2 [Reactor] Check for re-used Solution objects
- feba5f0 [Reactor] Improve error handling related to reactor surfaces
- 1d81c0b Handle Solution cloning in new CLib
- 34eff7e Fix handling of ReactorSurface for use in legacy CLib
- db45071 Add reactor_newSurface
- 4a88000 [Test] Add test of reactor surfaces for new CLib
- 566665f [Doc] Update some cloning docs / deprecation / TODO notes
- 70cc720 [MATLAB] Remove "clear all" commands that interfere with test logging
- 97da520 [Reactor] Deprecate unused version of addSurface
- b614984 [MATLAB] Fix test warnings related to reactor cloning
#2001 Toward consistent naming of reactor "contents"
- 2409e8d [Reactor] Begin transition of ReactorBase.contents to return Solution
- 865b801 [Python] Rename ReactorBase.thermo to contents
- 26500df [Python] Deprecate kinetics property of Reactor and ReactorSurface
- 1768cf6 [Reactor] Make ReactorSurface.syncState consistent with ReactorBase
#1988 Fix lxcat2yaml.py for empty product case
- 3fd5f18 [interface] fix lxcat2yaml.py for no product case
- 05e40d1 [test] check lxcat2yaml coversion of a elastic collision without the …
#1993 Replace macos-13 runners
- 3e99c4e [CI] Replace macos-13 / add macos-15-intel runner
#1995 Make Sim1D/Domain1D and SolutionArray usage more consistent
- 7228494 [oneD] Rename 'lambda' to 'Lambda'
- 5810fa4 [oneD] Edge case for importing 'lambda'
- 1eb566b [SolutionArray] Enable data path for HDF5 files
- ed74476 [SolutionArray] Implement component alias names
- 31e14ee [SolutionArray] Implement legacy import
- 7263b9d [oneD] Implement component alias names
- b15485a [oneD] Implement set/getValues
- c0be0b8 [unittest] Test deprecated 'lambda' and other updates
- 96aa3a1 [onedim] Address remaining papercuts
- 44581d7 [oneD] Tie set/getValues to Domain1D
- cbec1da [oneD] Update APIs for set/getValues
- de25fb9 [unittest] Update oneD unit tests
- 59d2bb6 [samples] Simplify profile setting
- 97249f2 [Python] Use grid setters/getters
- a3d69cb [oneD] Make setProfile accessible from Domain1D
- 93675b3 [unittest/samples] Use updated methods
- b20dea6 [oneD] Streamline access to work vector
- 553544e [oneD] Simplify to/fromArray
- e34069b Address review comments
- c6937cf [oneD] Rename spread_rate to spreadRate
- 858f5e5 [oneD] Deprecate checkers used by legacy CLib
- bc3d6ff [oneD] Implement single value access for Domain1D
- 8ed3bbc [oneD] Add Domain1D::values
- a6a341e [oneD] Simplify Domain1D::value API
#2009 Fix sourcegen markup
- 90efa34 [base] Fix docstring
- 2b6bf8f [sourcegen] Fix glitch in XML parsing
#2002 Rename ReactorBase::contents to ReactorBase::phase
- 8ef3115 [zeroD] Replace contents4 by phase
- 6be47c3 [Python] Rename ReactorBase.contents to phase
- 7e9866e [MATLAB] Replace contents with phase
- 5daa2ec [docs] Avoid deprecation warnings
- c529551 Address review comments
- a8ddb8d [Python] Avoid keyword for positional 'phase' parameter
#2003 Deprecate legacy Domain1D constructors
- d90322b [oneD] Deprecate legacy constructors
- c9c8d38 [Python] Deprecate Sim1D.phase
- 2b2cdaf [SolutionArray] Rename SolutionArray::solution to phase
- daddd44 Address review comments
#2011 sourcegen improvements
- 09556a3 [docs] Fix minor discrepancies
- 635c275 [sourcegen] Fix minor glitches
- c03dfea [sourcegen] Ensure all handles are int32_t
- 396552c [sourcegen] Fix vector [out] parameter
- f77249e Improve docstrings
- c38f7bf [sourcegen] Introduce Jinja2 macro
- 7a50d2f [sourcegen] Leverage Jinja2 macros
- 98de839 [sourcegen] Implement extraction of deprecation message
- 8a0b024 [sourcegen] Remove _auto from header configuration
- 2d06ee4 [doc] Document custom CLib code
- 53ef255 [sourcegen] Ensure int32_t is present in all headers
- ab988c2 [sourcegen] Do not escape Cantera in \brief
#2008 Add Domain1D info to Python API
- f913c62 [oneD] Fix Flow1D::toArray
- 6188d8b [Python] Implement Domain1D.info
- 7e21f3e Address review comments
#2010 Make index lookups more robust
- 55fe9d9 [base] Update exception handling for elementIndex
- 4bdc6e7 [base] Make element index checking more consistent
- b2d6490 [base] Improve exception handling for speciesIndex
- d58a32d [base] Make checkSpeciesIndex more useful
- b23315e [base] Make phaseIndex more consistent
- acced3d [base] Address additional indices/deprecations
- 99140c6 [zeroD] Always raise exception for invalid entries
- 1eb8e3c [base] Make exception messages consistent
- 131cf7b [Python] Simplify Sim1D.domain_index
- 2d205b9 [unittest] Fix legacy CLib unit tests
- 024a3cf [mix] Make return type consistent
- df45cd3 Address review comments
- 786f6c2 [base] Only issue warnings if Index behavior changes
- 80ed3db [legacy CLib] Add pragma deprecation warnings
- 61f25b7 [Kinetics] Implement raise option for kineticsSpeciesIndex
- 5e351a1 [CLib] Implement temporary custom code
#2012 Fix intermittent CI failures and add Python 3.14 CI jobs
- b16d319 [CI] Print CPU info for jobs that only run tests
- 1c6e203 [Samples] Use better initial guess for surface coverages
- dbfcd81 [1D] Relax default tolerances for ions / electrons
- 457cb1f [CI] Add standard jobs for Python 3.14
#2015 Handle removal of numpy.trapz
- 335486c [Python] Handle removal of numpy.trapz
#2014 Improve exceptions for abcName()
- 7ff3958 [base] Improve abcName exception handling
- 6e1a263 [oneD] Improve abcName exception handling
- 7024aad [zeroD] Improve abcName exception handling
- 6866fe3 [sourcegen] Fix docstring
- a7da25d [base] Avoid pointless const primitives
- 1c4ef60 [sourcegen] Make definitions consistent
- 64d4358 [sourcegen] Avoid const in primitive returns
- 6ae17f6 [CI] Add some unit tests
#1926 Add type stubs to the Python module
- dd11545 Initial cut at Python type stubs.
- 8d78104 Add myself to AUTHORS.md
- 9c0dc1c Merge simple stubs into code.
- 7db356c Add initial pyright and mypy settings to pyproject.toml.
- 08011b6 Add typing utility functions and improve yaml2ck.py.
- 22f4b7a Remove unnecessary all from _types.pyi.
- 47befba Add type ignores until Mypy gets TypeForm support.
- 1c7bcec Add Python API type checking to CI.
- b04563d Address several review comments.
- e8c509d Merge stubs into _types.py
- c77942e Change Literal string types of models into str
- 7d39f63 Remove unnecessary imports in stubs.
- a424e3f Address remaining review comments
- 5e042dc Minor corrections to cti2yaml.pyi
#2016 Fix surface density/concentration calculation for multi-site species
- fd4d005 [Thermo] Fix surface density/concentrations for multi-site species
#2018 Conserve sum of mass fractions in FlowReactor
- 4dab32c [Samples] Fix plotting units in surface chemistry PFR example
- 71aca94 [Reactor] Impose sum of mass fractions constraint on FlowReactor
- 69b71e2 [Test] Add regression test for Si3N4 deposition example
#2017 Conversion in units.pyx default function added to change the bytes into string
- a42ee3f Conversion in units.pyx default function added to change the bytes in…
- 90e7f9b Remove _UnitDictBytes type annotation
- fcde484 Took off my note, added a unity test to verify the string format
#1997 [MATLAB] Migrate to generated Clib
- ce76b43 [MATLAB] Added generated clib path requirement
- bffe190 [MATLAB] Renamed many functions to match the new
- b8cd8ec [MATLAB] Added physical constants from the ct
- 3ef00f9 [MATLAB] Added new Cantera Error Code
- 41754f8 [MATLAB] Fixed function names for generated clib
- e58fdd9 [MATLAB] Fixed several tests
- 87b2c2a [CI] Fix ctBuildInterface
- a7b13e4 [MATLAB] Add MATLAB version checks for ctLoad
- bc600c5 [MATLAB] Added clone argument to Reactor constructor
- 9fa6d7d [MATLAB] Fixed an issue where report is a property
- 3d72337 [zeroD] Add ReactorBase::area/setArea
- 925d560 [MATLAB] Simplify Domain1D constructors
- f430f93 [MATLAB] Update oneD access methods
- 3ada545 [MATLAB] Fixed several incorrect function signatures
- f8b4114 Update .gitignore
- 309ac75 [sourcegen] Fix/expand signatures
- a2b80d8 [unittests] Update CLib tests
- c94ddc9 [samples] Use updated API for C++ flamespeed
- 2bfb1fa [MATLAB] Amend thermo/utilities
- f7fa302 [MATLAB] Update onedim
- dcb46c1 [MATLAB] Update/fix OneDim samples
- b531512 [MATLAB] Updated several OneDim samples
- fbac613 [CI] Switch to Generated CLib for MATLAB tests
- e4895a5 [sourcegen] Avoid snake_case in API
- 6cec5ba [MATLAB] Create abstract ReactorBase
- fd7468c Address tests
- 4a122ed Mark abstract base classes as Abstract
- c13e847 [MATLAB] ReactorBase constructor creates new phase
- ac3b60a [MATLAB] Depreacated Kinetics.massProdRate
- 2d7e5da [MATLAB] Fixed failed tests for the updated error
- 7ca6403 [CI] Removed build legacy Clib from Coverage
- 4c9530f [MATLAB] Fixed some improper getter methods
- 4d0aa3b [MATLAB] Move concentrations
- 3bf3de3 [samples] Fix/simplify MATLAB samples
- fa65945 [sourcegen] Add return type double*
- 39027af [MATLAB] Enable copying of reactor mass fraction vector
- e6f6e2d [zeroD] Make energy/chemistryEnabled setter consistent
- 8d5637c Additional tweaks/fixes
- 722ecf9 [sourcegen] Added setState_TPX & setState_TPY by Name
- daf5117 [MATLAB] Use input arguments instead of varargin
- b83a84b [MATLAB] Removed unnecessary tolerance settings
- b923655 [MATLAB] Use PackageName for R2024a and older
- ac54818 [MATLAB] Simplify ctBuildInterface
- e170162 [MATLAB] Update README.md
- 6b2b8ed [CI] Update MATLAB workflow
- 293ea8c Streamline MATLAB getter/setter methods
- 3de9745 [zeroD] Add ReactorBase::chemistry/energyEnabled
#2019 Fix incorrect type annotations
- b42625c [Python] Fix type annotations for composition setters
- 6444a0f [Python] Fix type annotations for DustyGas properties
- f21cced [Python] Fix type annotations for Path as filename
- 20ff3e8 [Python] Fix key names for derivative settings type hint
- 33ab716 [Python] Fix type annotation for Solution slicing
- d8c9554 [Python] Fix Reactor type annotations
- d420822 [Python] Fix miscellaneous type annotation issues
- f46e7fc [Examples] Show timing info for 1D solver stats
- 2590a81 [Python] Fix Solution/Interface constructor type annotations
- ea01570 [Python] Fix type annotations for partly-constant state setters
- 2e953c2 [Test] Fix error in HDF restore assertions
- 00c9e20 [Python] Fix type annotations related to unit conversions
- 83e64d5 [Python] Fix Reaction-related type annotations
- 6d7b93f [CI] Ensure updated stubtest allow list is always saved
#2021 Bump to 3.2.0a5
- 19af7f8 Bump to 3.2.0a5
#2020 Fix some compiler warnings and update CI
- c246d63 Fix integer size-related compiler warnings
- ef52844 Fix unused variable compiler warnings
- da24ee1 [CLib] Fix size-related compile warnings in generated code
- 1a0f49e [Plasma] Remove spurious writelog calls
- fbb9b86 [CI] Re-enable optimization for Windows runners
- 4cde697 [CI] Add tests with multiple SCons versions
- 63b7f41 [CI] Test "scons install" step
- fa3f3c1 [SCons] Fix header installation for older SCons versions
#2024 Fix ThermoPhase.atomic_weight typing mistake
- 4630fb7 Fix typing related to ThermoPhase.element_index
- 5eb2db6 Remove bytes and float indices from type hints.
#2026 Documentation and example updates
- 51a29d5 Remove Jupyter notebook mention from README
- 4c56822 [Doc] Remove obsolete installation options
- c8c307a [Doc] Fix formatting of elastic_power_loss Sphinx annotation
- 2fc7d27 Fix miscellaneous typos
- 24eddcf [Matlab/Samples] Note required Cantera version
- a4587ae [Python/Samples] Fix outdated "requires" annotations
- bcdce97 [Python/Samples] Remove unused imports
- d3d0f9d [Python/Samples] Show plots when running from command line
- df72db0 [Doc] Add man page for lxcat2yaml
- 540c75c [Doc] Explain Ubuntu sample and data file locations
- e527295 [Doc] Update links to data files in input file tutorial
- 5cbece3 [Doc] Clarify that cp and cv are at constant composition
- 0cb850d [Doc] Fix energy equation for ideal gas mole reactor
- 2054d5e [Doc] Fix energy equation for ideal gas constant pressure mole reactor
#2028 Add new release notes and bump version to 3.2.0b1
- a1115b1 [Doc] Add draft release notes for Cantera 3.2.0
- 4ab35b3 Update copyright year
- 274cad3 Bump version to 3.2.0b1
#2029 Bump the actions group with 5 updates
- 7da52d3 [CI] Bump versions of GitHub actions
#2027 Add .NET examples to documentation / update docs
- a845ba3 [.NET] Rename C# sample files
- 6dbda17 [.NET] Update sample descriptions for sphinx-gallery
- 485b5eb [doc] Make C# samples available
- ff29ab4 [MATLAB] Add caution to samples folder
- b7100d8 [docs] Update MATLAB TB documentation
- c2283ff [docs] Update .NET API documentation
- 9970956 [MATLAB] Fix sphinx rendering
#1974 [MATLAB] Add multi-OS MATLAB test workflows to CI
- b99cdd5 [MATLAB] Fix unversioned library names
- f838825 [CI] Added multi-OS MATLAB test workflows
- 63d16fd [unittest] Disable slow examples in MATLAB unit test
- aaf11b4 [CI] Test alternative MATLAB versions
#2031 Matlab papercuts
- e5e495c [MATLAB] Make plotSolution local function
- 5bcd9f6 [MATLAB] Fix block formatting
- 3a77b16 [clib/MATLAB] Expose domain_phase
- f74c914 [MATLAB] Remove redundant flame2.m sample
- 92e646f [MATLAB] Rename diff_flame.m to diffusion_flame.m
- 60cb44c [MATLAB] Update flamespeed.m sample
- 75d7060 [MATLAB] Rename flame1.m to burner_flame.m
- ea5abaa [MATLAB] Rename catcomb.m to catalytic_combustion.m
- af844a5 [MATLAB] Improve sample formatting
- d4e07e8 [MATLAB] Rename atomicMasses to atomicWeights
- 79baf8a [MATLAB] Update ctTestSamples.m
- 2437e97 [MATLAB] Change wrapped function names
- 821c86e [MATLAB] Make thermo/kinetics/transport abstract
- 373a7dc [MATLAB] Update Domain1D.info
- eca4fc6 [MATLAB] Simplify Solution constructor
- 5cc78f9 [MATLAB] Simplify argument checks
- ba6d61b [MATLAB] Improve handling of execution mode
- 42f451c [MATLAB] Consolidate ctBuildInterface
- af11a35 [oneD] Make Inlet1D aware of state
- c2e430b [samples] Remove redundant Inlet1D setup
- 0ba504a [MATLAB] Ensure CounterFlowDiffusionFlame is set up correctly
#2036 Add Matlab docs to Sphinx
- 7a65604 [Doc] Add API docs for experimental Matlab interface to Sphinx
- d96ff22 [Doc] Add links from Matlab to C++ Doxygen docs
- 394426d [Doc] Simplify Matlab constructor documentation
- fcfc329 [Doc] Fix some typos/errors in Matlab docs
- f20e7c2 [MATLAB/Doc] Simplify method/property docstrings
- 0dbb1b2 [MATLAB/Doc] Make unit notations consistent and nicely formatted
#2037 Matlab housekeeping and namespace adoption
- f5811df [MATLAB] Name object handle "obj" in all methods
- b596173 Remove "_experimental" suffix from Matlab toolbox path
- 4217e59 [MATLAB] Rename 1D boundary classes for consistency with Python/C++
- e453261 [MATLAB] Move toolbox into "ct" namespace
- 3f4a123 [Matlab/Doc] Update Sphinx docs for ct namespace
- 6aa461a [Matlab] Update toolbox implementation namespaced calls
- f95b7ca [Matlab] Update samples and tests to use "ct" namespace
- 9f68171 [Matlab] Update documentation to reference "ct" namespace
- fce3d57 [MATLAB] Rename object handle in constructors
- 82571e8 [Matlab] Move reactor networks into ct.zeroD namespace
- 76bab99 [Matlab] Move flames into "ct.oneD" namespace
- e9f2d59 [Matlab] Simplify toolbox directory structure
#2040 Remove matlab ignite.m sample
- 61d5c5b [Matlab] Remove ignite.m
#2039 Fix corner cases in installation process
- d970c09 [SCons] Prevent unnecessary rebuilds of Python wheel
- 0872402 [SCons] Fix builds when "sphinx_docs=y" is applied through cantera.conf
- 848701b [SCons] Avoid rebuilding wheel during "scons install"
- 1dab14b [SCons] Install docs based on prior doc build
- ee18f3e [SCons] Remove misleading logger output
- 25cffe7 [SCons] Fix pkg-config when installing to /usr
- 0a3d0df [SCons] Fix printed doc directory in post-install message
#1976 advance limit handling to improve performance (#1453)
- fbb0d35 updates to advance limit handling to improve performance
- 1acbf58 addressing review comments
- 7261342 updated comments for new functions
- 3df74af fixed comment formatting
- a738158 fixed issues with Sundials callbacks
- 1f69131 addressing review comments
- 8448865 added/updated tests involving advance limits
- e73d916 [Numerics] Handle possible exceptions in evalRootFunctions
- d1d8536 [Doc] Minor adjustments to advance limit docs
#2044 Deprecate various unused / redundant functions
- eb0be0b Delete unreachable WaterPropsIAPWS::corr1 method
- 004ebea Deprecate unused WaterPropsIAPWS methods
- 3b4d548 Deprecate densSpinodalLiquid/Gas methods
- 0c841bc [Numerics] Deprecate unused matrix error handling options
- 8bbbc09 [Thermo] Deprecate redundant ThermoPhase::getPureGibbs method
- b61a8d8 [Thermo] Remove unused VPStandardStateTP::Gibbs_RT_ref method
- ae79f7d [Python] Deprecate add_module_directory
- 18b5ee5 [Python] Deprecate import_phases
- aaaadee [Kinetics] Deprecate unused getActivityConcentrations method
- 6eddecd [Doc] Fix formatting of deprecation annotations
- 41838ab [Kinetics] Deprecate unused newReaction overload
- fa287bb [Reactor] Fix version mentioned in deprecation warning
#2041 Fix handling of empty SpeciesThermo objects in Python
- 51d2cbc [Python] Fix wrapping of empty SpeciesThermo objects
#2046 Update versions in documentation
- 82a46f6 [Doc] Update installation instructions for Cantera 3.2
- 3dc39b7 [Python] Make dependency on typing_extensions explicit
- 33b1ebd [Doc] Update versions in compilation instructions
- f4dba76 [Doc] Require Matlab R2024a or newer
#2047 Matlab minimal edits
- 84a04e9 [MATLAB] Fix gitCommit
- 0fabd76 [MATLAB] Tweak samples page
#2048 Mark Fortran experimental and add MATLAB doc fixes
- c6a2646 [Fortran] Mark Foretran API as experimental
- a54dbc8 [MATLAB] Add admonition to docs
- fd4a869 [MATLAB] Fix docstrings of classes declared abstract
#2050 Fix "advance limits" tests on arm64 Linux
- ee632d9 [CI] Add arm64 Linux runner to main CI workflow
- 6cef9fb [Reactor] Fix unqualified "abs" calls in advance limit detection
- 01f71ea [SCons] Get processor info for arm64 Linux systems
#2049 Release Cantera 3.2.0
- 710a2fc [Doc] Update changelog for Cantera 3.2.0
- 7e9e92b Update links to stable documentation for 3.2.0
- fc4fae9 [Doc] Update release checklist
- 4a8358e Bump version to 3.2.0

Cantera 3.2.0 Changelog - Cantera/cantera GitHub Wiki

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