Syllabus - Bio723-class/Bio723-lecture GitHub Wiki

Week 0: Installing R, Getting Started with R

Week 1: Introduction to course; Data types and data structures, functions and control flow

Week 2: Data filtering, transformation, and tidying

Week 3: Data visualization in R

Week 4: Introduction to linear algebra; data as vectors; geometry of vector spaces

Week 5: Linear regression as a projection operation

Week 6: Non-linear curve fitting

Week 7: Principal components analysis and singular value decomposition

Week 7: Canonical variates analyses and other discriminant analysis methods

Week 9: Tree and graphs -- clustering methods, multidimensional scaling

Week 10: Randomization and Monte Carlo Methods: jackknife, bootstrap, and permutation tests

Week 11: Simulation

Week 12: Building bioinformatics pipelines I

Week 13: Building bioinformatics pipelines II