Service reports - BU-ISCIII/BU-ISCIII GitHub Wiki
Once a service has been complete, a report has to be generated both for the receiver and for our records. Follow the next steps to create a standarised report:
-
Move to the service folder in bioinfo_doc and create a new folder inside the result folder named
YYYYMMDD_entregaXX
, whereYYYYMMDD
is the date andXX
is the number od the resolution. -
Move into this new folder and copy the following files:
cp /processing_Data/bioinfo_doc/services/2020/SRVIIER215_20200211_TRIO145_bmartinezd_S/result/20200708_entrega02/lablog ./
cp /processing_Data/bioinfo_doc/services/2020/SRVIIER215_20200211_TRIO145_bmartinezd_S/result/20200708_entrega02/service_data_template.json.txt ./
- (Optional) Copy also the pipeline report and/or the email if there is anything there to keep (in case of the example folder, this file is
Entrega02_email.pdf
). - Inside
lablog
, change the sarvice code and optional pdf name if used. - Introduce the right metadata of the service in
service_data_template.json.txt
- Run the lablog:
bash lablog
- Once the files are ready to be delivered, create a tree file to have a log of all the files delivered:
tree /processing_Data/bioinformatics/sftp/<sftpfolder>/<serviceID> > <entregaID>.tree
Example: /processing_Data/bioinfo_doc/services/2020/SRVIIER215_20200211_TRIO145_bmartinezd_S/result/20200708_entrega02