23/06/2022

What

• Reorganization of the documentation repository- linked it on my private Github
• Prepared individual species genotype data for GWAS
• Prepared individual species phenotype data for GWAS
• Organize and documentation scripts for genetic diversity analyses
• Inspect currently running GWAS analysis runs on whole datasets
• GWAS software installations on the server

Where

• server /mnt/data/joseph/GWAS/

Use?

• Teosinte project

Missing

• Inspect the GWAS results with the overall data
• GAPIT software installations on the server and running individual species GWAS on selected phenotype trait

24/06/2022

What

• Sofware (GAPIT-R package) installations on the server
• Run Mexicana GWAS on weight 100 kernels

Where

• server /mnt/data/joseph/GWAS/

Use?

• Teosinte project

Missing

• Run GWAS on other species for weight 100 kernels
• Compare the results
• Optimize the approach for other phenotypes

27/06/2022

What

• Inspect Mexicana GWAS results
• Write and run scripts for the other GWAS species

Where

• server /mnt/data/joseph/GWAS/

Use?

• Teosinte project

Missing

• Optimize the approach for other phenotypes
• Improve the analysis based on the GWAS runs so far