Results

The results are presented in html to make them easy to navigate and understand. To generate the html files you must run the generate_results.sh script. This will generate all the utils (css, js, img...) and necessary html files.

The report should be opened with an updated web browser.

Graph

Usage

generate_results.sh

bash generate_results.sh

In a nutshell...

1. Copies web utilities into RESULTS/ (css, img, js...).
2. Generates info.html.
3. Generates quality reports of each sample. (with listFastQCReports.pl and createHTML.pl).
4. Generates quality.html.
5. Generates merged results table (with mergeResults.R).
6. Generates results web table for each sample and organism (with script createResultHtml.sh).
7. Generates samples.html.
8. Generates statistics of each sample and organism (with script statistics.sh).
9. Generates result summary.html.

Note: To run this script you must have generated the sample name list with Sample Name list generator and all the analysis steps.

##I/O

• Output files: (In RESULTS/)

  • summary.html: File with the samples overview.

  • samples.html: File with a detailed by sample and by organism results.

  • quality.html: File with the analysis quality report.

  • info.html: File with information about the results, and access to this wiki.