| Day 1 |
Monday, 2020-05-04 Introduction to R and Tidyverse |
| 12:00 PM |
Welcome, Introductions and Getting Started Welcome Slides (PDF) |
| 12:30 |
Introduction to R Intro to RStudio Slides (PDF) |
| 1:15 |
Break |
| 1:30 |
R Introduction to ggplot |
| 2:15 |
Break |
| 2:30 |
R Introduction to tidyverse |
| 3:15 |
Exercises Introduction: Intro to R See the intro to R module cheatsheet for documentation on the functions used in the module. |
| 4:00 |
End |
| Day 2 |
Tuesday, 2020-05-05 |
| 12:00 PM |
Consultation day: CCDL Staff will be available for assistance via Slack and Zoom. See our Resources for Consultation Days page. |
| 4:00 |
End |
| Day 3 |
Wednesday, 2020-05-06 Intro to Bulk RNA-seq Intro to RNA-Seq Slides (PDF) |
| 12:00 PM |
Bulk RNA-seq I: QC, trim, and quantification with Salmon |
| 12:45 |
Bulk RNA-seq II: Gene-Level Summaries with tximport |
| 1:30 |
Bulk RNA-seq III: Exploratory Analyses |
| 2:15 |
Break |
| 2:30 |
Bulk RNA-seq IV: Differential Expression Analysis: tximport, Differential Expression |
| 3:15 |
Exercise Introduction: Bulk RNA-seq See the bulk RNA-seq module cheatsheet for documentation on the functions used in the module. |
| 4:00 |
End |
| Day 4 |
Thursday, 2020-05-07 |
| 12:00 PM |
Consultation day: CCDL Staff will be available for assistance via Slack and Zoom. See our Resources for Consultation Days page. |
| 4:00 |
End |
| Day 5 |
Friday, 2020-05-08 |
| 12:00 PM |
Consultation day: CCDL Staff will be available for assistance via Slack and Zoom. See our Resources for Consultation Days page. |
| 2:00 |
Reconvene in Zoom meeting for Presentations |
| 4:00 |
Adjourn |