Troubleshooting - ActiveBrainAtlasPipeline/neuroglancer GitHub Wiki

Common problems and their solutions

  1. When running create_meta.py, the bioformats package complains about missing OMEXML, make sure these packages are at these versions as of July 2021:
    1. Python 3.6.9 on Ubuntu 18.04
      1. bioformats==0.1.15
      2. python-bioformats==4.0.3
      3. numpy==1.19.3
      4. python-javabridge==4.0.2
    2. Python 3.8.10 on Ubuntu 20.04
      1. bioformats==0.1.15
      2. python-bioformats==4.0.5
      3. numpy==1.21.0
      4. python-javabridge==4.0.3