Citing Truvari

English, A.C., Menon, V.K., Gibbs, R.A. et al. Truvari: refined structural variant comparison preserves allelic diversity. Genome Biol 23, 271 (2022). https://doi.org/10.1186/s13059-022-02840-6

Citations

List of publications using Truvari. Most of these are just pulled from a Google Scholar Search. Please post in the show-and-tell to have your publication added to the list.

• A robust benchmark for detection of germline large deletions and insertions
• Leveraging a WGS compression and indexing format with dynamic graph references to call structural variants
• Duphold: scalable, depth-based annotation and curation of high-confidence structural variant calls
• Parliament2: Accurate structural variant calling at scale
• Learning What a Good Structural Variant Looks Like
• Long-read trio sequencing of individuals with unsolved intellectual disability
• lra: A long read aligner for sequences and contigs
• Samplot: a platform for structural variant visual validation and automated filtering
• AsmMix: A pipeline for high quality diploid de novo assembly
• Accurate chromosome-scale haplotype-resolved assembly of human genomes
• Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
• NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data
• SVIM-asm: structural variant detection from haploid and diploid genome assemblies
• Readfish enables targeted nanopore sequencing of gigabase-sized genomes
• stLFRsv: A Germline Structural Variant Analysis Pipeline Using Co-barcoded Reads
• Long-read-based human genomic structural variation detection with cuteSV
• An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
• Paragraph: a graph-based structural variant genotyper for short-read sequence data
• Genome-wide investigation identifies a rare copy-number variant burden associated with human spina bifida
• TT-Mars: Structural Variants Assessment Based on Haplotype-resolved Assemblies
• An ensemble deep learning framework to refine large deletions in linked-reads
• MAMnet: detecting and genotyping deletions and insertions based on long reads and a deep learning approach](https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbac195/6587170)
• Automated filtering of genome-wide large deletions through an ensemble deep learning framework