gadi_transition_access modules - ACCESS-NRI/accessdev-Trac-archive GitHub Wiki
List of modules from raijin:/projects/access/modules for apps in raijin:/projects/access/apps
Note there are a small number of applications in ~access/apps without modules, see list at bottom of page
| # Module Name | # Versions | # Owner | # !Action/Notes | # Status |
|---|---|---|---|---|
| =DEPRECATED = | 2 | wml548 | Deprecated - to delete | |
| =ancil-utils = | 1 | wml548 | Required - ancillary production for ASCA, canopy height and etc | canopy_height, varGrid.py OK, ASCAT not working: no conv2nc |
| =ants = | 8 | wml548 | 0.8.0, 0.9.0, 0.10.0 0.11.0 and 0.12.0 installed on Gadi | 0.8.0 under testing |
| =bufrdc = | 1 | |||
| =cap = | 9 | mrd599, wml548 | Required for ancil generation -saw; 9.1 ported-wml548 | works for everything except the climatology dataset for variable grids; |
| temporary solution: using raijin image technology & cap9.1 copy of Raijin | ||||
| =cawcr-utils = | 1 | ttl548 | Required - various BoM utils | |
| =cdat-lite = | 4 | Is this in conda? -saw | cdat6 in bom_envs/python_2.7.16-lwenming | |
| =cmake = | 1 | Should be a central module -saw | ||
| =cms = | 1 | clex | Delteted | |
| =conda = | 1 | wml548 | See miniconda | |
| =cylc = | 1 | Required | ||
| =drhook = | 5 | Required | ||
| =dummygrib = | 1 | Required | ||
| =ecbuild = | 1 | ttl548 | Required to build some EC software | |
| =eccodes = | 1 | Central module. Required for UM >= vn 11.2 | ||
| =emos340 = | 1 | ttl548 | Required for GRIB1/BUFR, ../apps/emos to be deleted | |
| =fcm = | 17 | Required | ||
| =fftw = | 1 | ttl548 | Central module | |
| =gcom = | 97 | Required - new versions needed for Gadi mpi | ||
| =geos = | 1 | Only required by iris/cartopy? | ||
| =grib-api = | 5 | ttl548 | Central module. Requried for UM <= vn 11.1 | |
| =hdf5 = | 1 | Central module | ||
| =imagej = | 1 | aph502 | Deprecated - to delete | |
| =iris = | 6 | Available in Conda | ||
| =java = | 2 | wml548 | Central module: required by trui | java8 works so not required |
| =libmo_unpack = | 1 | Only used by iris so now replaced by conda | ||
| =libpng = | 1 | |||
| =magics++ = | 1 | ttl548 | Required for Metview, ../apps/magics2 to be deleted | |
| =mars = | 6 | ttl548 | Required for mars-like interface to grib archive | |
| =mdssdiff = | 1 | CLEX | Now in conda - deleted | |
| =metview = | 1 | ttl548 | Required | |
| =miniconda = | 5 | wml548 | 4.3, 4.4, 4.5, 4.6, 4.7 and latest=>4.8 installed | |
| =miniconda3 = | 1 | wml548 | Deprecated - to be replaced by miniconda | |
| =mnctools = | 1 | CLEX | Now in conda - to be deleted | |
| =moose-client-wrapper = | 4 | wml548 | Required | done |
| =mpas = | 1 | |||
| =mysql = | 1 | ttl548 | Deprecated - to delete | |
| =ncas-utils = | 1 | |||
| =nccompress = | 1 | clex | Now in Conda - deleted | |
| =nci_admin = | 1 | wml548 | Required - managing BOM project resources | done |
| =ncimonitor = | 1 | clex | Now in Conda -deleted | |
| =netcdf = | 1 | Central module | ||
| =netcdf-access = | 1 | Central module | ||
| =netcdf-fortran = | 1 | Central module | ||
| =netcdf-fortran-access = | 1 | Central module | ||
| =ninja = | 1 | aph502 | Deprecated - to delete | |
| =nmlcompare = | 1 | aph502 | Deleted | |
| =nmoc-utils = | 1 | ttl548 | Required - various BoM utils | |
| =nwp_plot = | 4 | wml548 | Required - for NWP plotting | done: problems opening grib files |
| =nwp_pytools = | ? | wml548 | Required - for suites, model evaluation and verification | done: renamed as nwptools_py2.YYYYMM |
| =oasis3 = | 1 | Requried | ||
| =oasis3-mct-local = | 9 | mrd599 | Required for ACCESS-CM2. | |
| =oasis3-mct-longrun = | 3 | |||
| =obstat = | 3 | ttl548 | to be deleted | |
| =odb = | 10 | ttl548 | Required | |
| =odbapi = | 4 | |||
| =odbserver = | 0.16.2-ops-intel1903{,-debug} | mjw548 | Required for OPS. | Done |
| =openjpeg = | 1 | ttl548 | Required | |
| =pfunit = | 3 | |||
| =pio = | 2 | |||
| =pnetcdf = | 1 | |||
| =pspline = | 1 | ttl548 | Required | |
| =py_utils = | 1 | wml548 | Required? | |
| =rmedtools = | 1 | wml548 | Installed | done |
| =robodoc = | 1 | wml548 | Required | done |
| =rose = | 13 | Required | ||
| =rttov = | {11.3b,12.3}_ifort1903{,-debug} | mjw548 | Required for OPS/VAR | Done |
| =shumlib = | 7 | mrd599 | Required for UM vn10.8 to 11.1 | |
| =sidl = | 1 | saw562 | Required for high-res nesting suite | |
| =smocs = | 2 | wml548 | Not sure | |
| =sms = | 1 | wml548 | Deprecated - to delete | |
| =stash_utils = | 1 | wml548 | Required? | |
| =suite_audit = | 1 | wml548 | Required? | |
| =trui = | 2 | wml548 | Required | done |
| =um = | 1 | Used by some UMUI versions, incl vn7.3 | ||
| =um2netcdf-niwa = | 1 | |||
| =ver = | 1 | wml548, vvk548 | Required - RMED/GMED | |
| =verify = | 4 | ttl548 | Deprecated - to delete | |
| =verpy = | 3 | wml548 | Required - RMED/GMED | done |
| =wrf = | 1 | aph502 | Deleted | |
| =zlib = | 1 | ttl548 | Central module | |
| =pythonlib/ARCCSSive = | 7 | Deprecated - Python modules to be replaced with CLEX/BoM Conda environments | ||
| =pythonlib/Biggus = | 4 | Deprecated - to delete | ||
| =pythonlib/Cython = | 1 | Deprecated - to delete | ||
| =pythonlib/FoBiS.py = | 1 | Deprecated - to delete | ||
| =pythonlib/ImageMetaTag = | 1 | Deprecated - to delete | ||
| =pythonlib/Jinja2 = | 1 | Deprecated - to delete | ||
| =pythonlib/MarkupSafe = | 1 | Deprecated - to delete | ||
| =pythonlib/MySQL-python = | 1 | ttl548 | Deprecated - to delete | |
| =pythonlib/PIL = | 2 | Deprecated - to delete | ||
| =pythonlib/Pillow = | 1 | Deprecated - to delete | ||
| =pythonlib/PyYAML = | 1 | Deprecated - to delete | ||
| =pythonlib/SQLAlchemy = | 2 | Deprecated - to delete | ||
| =pythonlib/ScientificPython = | 1 | Deprecated - to delete | ||
| =pythonlib/Shapely = | 2 | Deprecated - to delete | ||
| =pythonlib/afterburner = | 2 | Deprecated - to delete | ||
| =pythonlib/ants = | 8 | wml548 | see ~/access/apps/ants | |
| =pythonlib/backports = | 1 | Deprecated - to delete | ||
| =pythonlib/backports.ssl_match_hostname = | 1 | Deprecated - to delete | ||
| =pythonlib/basemap = | 2 | Deprecated - to delete | ||
| =pythonlib/brewer2mpl = | 1 | Deprecated - to delete | ||
| =pythonlib/bufr-metadb = | 1 | ttl548 | Deprecated - to delete | |
| =pythonlib/bufr-transform = | 1 | ttl548 | Deprecated - to delete | |
| =pythonlib/cartopy = | 4 | Deprecated - to delete | ||
| =pythonlib/cdat-lite = | 4 | Deprecated - to delete | ||
| =pythonlib/cf-units = | 1 | Deprecated - to delete | ||
| =pythonlib/cis = | 1 | Deprecated - to delete | ||
| =pythonlib/cmor = | 2 | Deprecated - to delete | ||
| =pythonlib/dask = | 2 | Deprecated - to delete | ||
| =pythonlib/dataset = | 1 | Deprecated - to delete | ||
| =pythonlib/decorator = | 1 | Deprecated - to delete | ||
| =pythonlib/docutils = | 1 | Deprecated - to delete | ||
| =pythonlib/drslib = | 1 | Deprecated - to delete | ||
| =pythonlib/enum34 = | 1 | Deprecated - to delete | ||
| =pythonlib/esgf-pyclient = | 1 | Deprecated - to delete | ||
| =pythonlib/f90nml = | 6 | Deprecated - to delete | ||
| =pythonlib/functools32 = | 1 | Deprecated - to delete | ||
| =pythonlib/gprof2dot = | 1 | Deprecated - to delete | ||
| =pythonlib/h5netcdf = | 1 | Deprecated - to delete | ||
| =pythonlib/h5py = | 1 | wml548 | In nwptools_py2.201911 | done |
| =pythonlib/ipython = | 2 | Deprecated - to delete | ||
| =pythonlib/iris = | 6 | Deprecated - to delete | ||
| =pythonlib/iris_grib = | 1 | Deprecated - to delete | ||
| =pythonlib/jsonschema = | 1 | Deprecated - to delete | ||
| =pythonlib/llvmlite = | 1 | Deprecated - to delete | ||
| =pythonlib/lxml = | 1 | Deprecated - to delete | ||
| =pythonlib/mask_tools = | 1 | Deprecated - to delete | ||
| =pythonlib/matplotlib = | 1 | Deprecated - to delete | ||
| =pythonlib/maybe = | 1 | Deprecated - to delete | ||
| =pythonlib/mock = | 1 | Deprecated - to delete | ||
| =pythonlib/mule = | 7 | Deprecated - to delete | ||
| =pythonlib/netCDF4 = | 1 | Deprecated - to delete | ||
| =pythonlib/nose = | 1 | Deprecated - to delete | ||
| =pythonlib/numba = | 1 | Deprecated - to delete | ||
| =pythonlib/numexpr = | 1 | Deprecated - to delete | ||
| =pythonlib/numpy = | 2 | Deprecated - to delete | ||
| =pythonlib/pandas = | 3 | Deprecated - to delete | ||
| =pythonlib/payu = | 1 | Deprecated - to delete | ||
| =pythonlib/pep8 = | 1 | Deprecated - to delete | ||
| =pythonlib/pip = | 2 | Deprecated - to delete | ||
| =pythonlib/pp = | 1 | Deprecated - to delete | ||
| =pythonlib/previous = | 2 | Deprecated - to delete | ||
| =pythonlib/psutil = | 1 | Deprecated - to delete | ||
| =pythonlib/pybufr_ecmwf = | 1 | wml548, ttl548 | In nwptools_py2.201911 | done |
| =pythonlib/pygrib = | 1 | Deprecated - to delete | ||
| =pythonlib/pyhdf = | 1 | Deprecated - to delete | ||
| =pythonlib/pyke = | 1 | Deprecated - to delete | ||
| =pythonlib/pyshp = | 1 | Deprecated - to delete | ||
| =pythonlib/pyspharm = | 1 | Deprecated - to delete | ||
| =pythonlib/pytest = | 2 | Deprecated - to delete | ||
| =pythonlib/python-bufr = | 1 | wml548 | required | done |
| =pythonlib/python-common-v2 = | 1 | Deprecated - to delete | ||
| =pythonlib/python2-prereqs = | 1 | Deprecated - to delete | ||
| =pythonlib/pytz = | 2 | Deprecated - to delete | ||
| =pythonlib/pyzmq = | 1 | Deprecated - to delete | ||
| =pythonlib/rpy2 = | 2 | Deprecated - to delete | ||
| =pythonlib/seaborn = | 1 | Deprecated - to delete | ||
| =pythonlib/sh = | 1 | Deprecated - to delete | ||
| =pythonlib/singledispatch = | 1 | Deprecated - to delete | ||
| =pythonlib/six = | 2 | Deprecated - to delete | ||
| =pythonlib/statsmodels = | 1 | Deprecated - to delete | ||
| =pythonlib/tables = | 1 | Deprecated - to delete | ||
| =pythonlib/toolz = | 2 | Deprecated - to delete | ||
| =pythonlib/tornado = | 1 | Deprecated - to delete | ||
| =pythonlib/umfile_utils = | 3 | mrd599 | required | |
| =pythonlib/verpy = | 1 | Deprecated - to delete | ||
| =pythonlib/virtualtime = | 1 | Deprecated - to delete | ||
| =pythonlib/windspharm = | 1 | Deprecated - to delete | ||
| =pythonlib/xarray = | 2 | Deprecated - to delete | ||
| =pythonlib/xray = | 2 | Deprecated - to delete |
List of applications in ~access/apps without module in ../modules
| # Apps Name | # Versions | # Owner | # !Action/Notes | # Status |
|---|---|---|---|---|
| =cram = | ||||
| =gapi199 = | 1.9.9 | ttl548 | Deprecated - to delete | |
| =jasper = | 1.9 | ttl548 | Deprecated - to delete | |
| =modules-common-v2.0.tcl = | ||||
| =pcmdi_metrics = | ||||
| =xconv = | saw562 | Installed as a module | done | |
| =xancil = | saw562 | Installed as a module | done | |
| =xxdiff = | wml548 | Installed as a module | done | |
| =zenity = | wml548 | Deprecated - to delete |