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Staton Lab UTIA Computational Biology Consulting and Resources
Welcome to the UTIA Computational Biology Consulting and Resources wiki!
Consulting
Consulting is offered by Dr. Meg Staton, Associate Professor (EPP) and Matt Huff, M.S. (EPP), research associate in the Staton lab.
Matt Huff will have office hours in the spring semester (January 24th-May 10th) on Tuesdays from 1 to 2:30 in PBB 118. We welcome questions about DNA and RNA data analysis as well as Linux, R, and python. Consulting appointments with Meg Staton (Associate Professor, EPP, [email protected]) and/or Matt ([email protected]) can also be made via email.
Workshops
We regularly offer workshops on getting started with Linux and RNASeq analysis as well as journal clubs focused on computational biology. Registering to receive course credit is optional; all are welcome.
We appreciate feedback on what other topics would be beneficial to students, postdocs, and faculty.
- January 2022 - RNASeq analysis - All course materials are available including recordings of sessions. If you would like to be added to the servers and follow along at your own pace, please contact Matt ([email protected]).
- Fall 2021, EPP 604: Journal Club Topic: Genome Evolution.
- Spring 2020, EPP 604: Journal Club Topic: RNA Sequencing.
- Fall 2020 - EPP622 Bioinformatic Applications - Full semester course, 3 credit hours, covering intro to Linux, intro to python, DNA sequence analysis for variants, RNASeq analysis for differential gene expression. All course materials are available including recordings of sessions. If you would like to be added to the servers and follow along at your own pace, please contact Meg ([email protected]). To be offered Fall 2022
- Fall 2019 - workshop or EPP 531, Practicing Python with Rosalind
- Summer 2019 - workshop or EPP 531, Introduction to Python
Computational Equipment
This is user and system administration documentation for our two servers - Centaur and Sphinx - and links to guides and documentation on how to install and run programs.
New to this equipment or wondering what this is all about? Start with the FAQs.
A brief overview of this system can be found in our orientation slides; this wiki will go into greater depth on these topics.
Check this page to make sure you have been approved to use our servers.