Citing QuPath - qupath/qupath Wiki

Original URL:

How to cite QuPath

If you use QuPath in your work, please cite the QuPath paper published in Scientific Reports:

Bankhead, P. et al. (2017). QuPath: Open source software for digital pathology image analysis. Scientific Reports.

An earlier version of this work was also available on bioRxiv.

Publications using QuPath

The following publications describe having used QuPath. I've omitted review articles or citations that only refer to QuPath, but don't describe actually using it.

IMPORTANT! Please remember to cite the Scientific Reports paper if you use QuPath!

The following key indicates what, if anything, was cited in the main references for each paper below.

Please report any corrections or additions!

A small number of papers don't have an associated icon because the primary work was carried out at Queen's University Belfast and pre-dated QuPath's public release.



  1. Affo, S. et al. (2021). Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations. Cancer Cell. ๐Ÿ“—

  2. Ahtianinen, M. et al. (2021). Immune Contexture of MMR-Proficient Primary Colorectal Cancer and Matched Liver and Lung Metastases. Cancers. ๐Ÿ“—

  3. Al-Sahaf, S. et al. (2021). Increased Abundance of Tumour-Associated Neutrophils in HPV-Negative Compared to HPV-Positive Oropharyngeal Squamous Cell Carcinoma Is Mediated by IL-1R Signalling. Frontiers in Oral Health. ๐Ÿ“—

  4. Alame, M. et al. (2021). The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling. Theranostics. ๐Ÿ“—

  5. Alderdice, M. et al. (2021). Evolutionary genetic algorithm identifies IL2RB as a potential predictive biomarker for immune-checkpoint therapy in colorectal cancer. NAR Genomics and Bioinformatics. ๐Ÿ“—

  6. Almeida, C. F. et al. (2021). Satellite cells deficiency and defective regeneration in dynamin 2โ€related centronuclear myopathy. The FASEB Journal. ๐Ÿ“—

  7. Angelini, R. et al. (2021). Visualizing Cholesterol in the Brain by On-Tissue Derivatization and Quantitative Mass Spectrometry Imaging. Analytical Chemistry. ๐Ÿ“—

  8. Apaolaza, P. S. et al. (2021). Islet expression of type I interferon response sensors is associated with immune infiltration and viral infection in type 1 diabetes. Science Advances. ๐Ÿ“—

  9. Avgustinova, A. et al. (2021). Repression of endogenous retroviruses prevents antiviral immune response and is required for mammary gland development. Cell Stem Cell. ๐Ÿ“—

  10. Aung, T. N. et al. (2021). A new tool for technical standardization of the Ki67 immunohistochemical assay. Modern Pathology. ๐Ÿ“—

  11. Babak, M. V. et al. (2021). Interfering with metabolic profile of triple-negative breast cancers using rationally-designed metformin prodrugs. Angewandte Chemie. ๐Ÿ˜ž

  12. Bahmani, B. et al. (2021). Intratumoral immunotherapy using platelet-cloaked nanoparticles enhances antitumor immunity in solid tumors. Nature Communications. ๐Ÿ˜ž

  13. Baldavira, C. M. et al. (2021). The expression patterns and prognostic significance of pleckstrin homology-like domain family A (PHLDA) in lung cancer and malignant mesothelioma. Journal of Thoracic Disease. ๐Ÿ˜ž

  14. Balkrishna, A. et al. (2021). Supercritical Fluid Extract of Putranjiva roxburghii Wall. Seeds Mitigates Fertility Impairment in a Zebrafish Model. Molecules. ๐Ÿ“—

  15. Baranova, K. et al. (2021). Evaluation of an open-source machine-learning tool to quantify bone marrow plasma cells. Journal of Clinical Pathology. ๐Ÿ“—

  16. Barber-Axthelm, I. M. et al. (2021). Stem cellโ€“derived CAR T cells traffic to HIV reservoirs in macaques. JCI Insight. ๐Ÿ“—

  17. Belnoue, E. et al. (2021). Novel Protein-Based Vaccine against Self-Antigen Reduces the Formation of Sporadic Colon Adenomas in Mice. Cancers. ๐Ÿ“—

  18. Bhagavatula, S. et al. (2021). A Miniaturized Platform for Multiplexed Drug Response Imaging in Live Tumors. Cancers. ๐Ÿ“—

  19. Bleeser, T. et al. (2021). Effects of Maternal Abdominal Surgery on Fetal Brain Development in the Rabbit Model. Fetal Diganosis and Therapy. ๐Ÿ“—

  20. Blocker, S. J. et al. (2021). Ex Vivo MR Histology and Cytometric Feature Mapping Connect Three-dimensional in Vivo MR Images to Two-dimensional Histopathologic Images of Murine Sarcomas. Radiology: Imaging Cancer. ๐Ÿ“—

  21. Boby, N. et al. (2021). Protective Effect of Pyrus ussuriensis Maxim. Extract against Ethanol-Induced Gastritis in Rats. Antioxidants. ๐Ÿ˜ž

  22. Brait, V. H. et al. (2021). Longitudinal hippocampal volumetric changes in mice following brain infarction. Scientific Reports. ๐Ÿ“—

  23. Buedts, L. et al. (2021). The landscape of copy number variations in classical Hodgkin lymphoma: a joint KU Leuven and LYSA study on cell-free DNA. Blood Advances. ๐Ÿ˜ž

  24. Burgess, S. J. et al. (2021). The Role of Csmd1 during Mammary Gland Development. Genes. ๐Ÿ“—

  25. Caldwell, C. et al. (2021). Validation of a DKK1 RNAscope chromogenic in situ hybridization assay for gastric and gastroesophageal junction adenocarcinoma tumors. Scientific Reports. ๐Ÿ“—

  26. Capitao, M. et al. (2021). Anti-Tumor Efficacy of PD-L1 Targeted Alpha-Particle Therapy in a Human Melanoma Xenograft Model. Cancers. ๐Ÿ“—

  27. Carstens, J. L. et al. (2021). Stabilized epithelial phenotype of cancer cells in primary tumors leads to increased colonization of liver metastasis in pancreatic cancer. Cell Reports. ๐Ÿ“—

  28. Chen, C. et al. (2021). Imaging mass cytometry reveals generalised deficiency in OXPHOS complexes in Parkinsonโ€™s disease. npj Parkinson's Disease. ๐Ÿ“—

  29. Chodankar, R. R. et al. (2021). The endometrial response to modulation of ligand-progesterone receptor pathways is reversible. Fertility and Sterility. ๐Ÿ“—

  30. Cieล›la, M. et al. (2021). Oncogenic translation directs spliceosome dynamics revealing an integral role for SF3A3 in breast cancer. Molecular Cell. ๐Ÿ“—

  31. Ciregia, F. et al. (2021). Modulation of ฮฑVฮฒ6 integrin in osteoarthritis-related synovitis and the interaction with VTN(381โ€“397 a.a.) competing for TGF-ฮฒ1 activation. Experimental & Molecular Medicine. ๐Ÿ“—

  32. Cizkova, K. et al. (2021). Comparative Analysis of Immunohistochemical Staining Intensity Determined by Light Microscopy, ImageJ and QuPath in Placental Hofbauer Cells. Acta Histochemica et Cytochemica. ๐Ÿ“—

  33. Chen, K-T. et al. (2021). Neuronavigation-guided focused ultrasound for transcranial blood-brain barrier opening and immunostimulation in brain tumors. Science Advances. ๐Ÿ˜ž

  34. Consonni, F. M. et al. (2021). Heme catabolism by tumor-associated macrophages controls metastasis formation. Nature Immunology. ๐Ÿ˜ž

  35. Dabagian, H. et al. (2021). PARP Targeted Alpha-Particle Therapy Enhances Response to PD-1 Immune-Checkpoint Blockade in a Syngeneic Mouse Model of Glioblastoma. ACS Pharmacology & Translational Science. ๐Ÿ˜ž

  36. Dahabieh, M. S. et al. (2021). Silencing PEX26 as an Unconventional Mode to Kill Drug-Resistant Cancer Cells and Forestall Drug Resistance. Autophagy. ๐Ÿ˜ž

  37. Ding, J. J. et al. (2021). Vagus nerve stimulation does not alter brainstem nuclei morphology in patients with refractory epilepsy. Epilepsy & Behavior. ๐Ÿ“—

  38. Duran, J. et al. (2021). Astrocytic glycogen accumulation drives the pathophysiology of neurodegeneration in Lafora disease. Brain. ๐Ÿ“—

  39. Ember, K. J. I. et al. (2021). Nonโ€invasive detection of ischemic vascular damage in a pig model of liver donation after circulatory death. Hepatology. ๐Ÿ“—

  40. Ercolano, G. et al. (2021). PPARษฃ drives IL-33-dependent ILC2 pro-tumoral functions. Nature Communications. ๐Ÿ“—

  41. Esmail, S. et al. (2021). Rapid and accurate agglutination-based testing for SARS-CoV-2 antibodies. Cell Reports Methods. ๐Ÿ˜ž

  42. Eustace, A. J. et al. (2021). The role of infiltrating lymphocytes in the neo-adjuvant treatment of women with HER2-positive breast cancer. Breast Cancer Research and Treatment. ๐Ÿ“—

  43. Fetz, A. et al. (2021). Spray coagulation with snare-tip versus argon plasma coagulation: An ex vivo study evaluating tissue effects. Endoscopy International Open. ๐Ÿ˜ž

  44. Fischietti, M. et al. (2021). Schlafen 5 as a novel therapeutic target in pancreatic ductal adenocarcinoma. Oncogene. ๐Ÿ˜ž

  45. Fujii, T. et al. (2021). MEF2C regulates osteoclastogenesis and pathologic bone resorption via c-FOS. Bone Research. ๐Ÿ˜ž

  46. Ganig, N. et al. (2021). Proteomic Analyses of Fibroblast- and Serum-Derived Exosomes Identify QSOX1 as a Marker for Non-invasive Detection of Colorectal Cancer. Cancers. ๐Ÿ“—

  47. Garcia, D. I. et al. (2021). High-Fat Diet Drives an Aggressive Pancreatic Cancer Phenotype. Journal of Surgical Research. ๐Ÿ˜ž

  48. Garcia-Mesa, Y. et al. (2021). Dimethyl Fumarate, an Approved Multiple Sclerosis Treatment, Reduces Brain Oxidative Stress in SIV-Infected Rhesus Macaques: Potential Therapeutic Repurposing for HIV Neuroprotection. Antioxidants. ๐Ÿ˜ž

  49. Go, D.-M. et al. (2021). Regulation of Helicobacter-induced gastritis by programmed death ligand 1- expressing classical dendritic cells. Cellular and Molecular Gastroenterology and Hepatology. ๐Ÿ˜ž

  50. Goubet, A.-G. et al. (2021). Multifaceted modes of action of the anticancer probiotic Enterococcus hirae. Cell Death & Differentiation. ๐Ÿ“—

  51. Grisaru-Tal, S. et al. (2021). Primary tumors from mucosal barrier organs drive unique eosinophil infiltration patterns and clinical associations. OncoImmunology. ๐Ÿ“—

  52. Gudiรฑo, V. et al. (2021). RAC1B modulates intestinal tumourigenesis via modulation of WNT and EGFR signalling pathways. Nature Communications. ๐Ÿ˜ž

  53. Han, Y. N. et al. (2021). Nitric Oxide Produced by the Antioxidant Activity of Verapamil Improves the Acute Wound Healing Process. Tissue Engineering and Regenerative Medicine. ๐Ÿ˜ž

  54. Harms, K. et al. (2021). Virus-positive Merkel cell carcinoma is an independent prognostic group with distinct predictive biomarkers. Clinical Cancer Research. ๐Ÿ˜ž

  55. Hartmann, O. et al. (2021). Implementation of CRISPR/Cas9 Genome Editing to Generate Murine Lung Cancer Models That Depict the Mutational Landscape of Human Disease. Frontiers in Cell and Developmental Biology. ๐Ÿ˜ž

  56. Hasan, N. et al. (2021). Brown adipocyte-specific knockout of Bmal1 causes mild but significant impairment of thermogenesis in mice. Molecular Metabolism. ๐Ÿ“—

  57. Heij, L. R. et al. (2021). Nerve Fibers in the Tumor Microenvironment Are Co-Localized with Lymphoid Aggregates in Pancreatic Cancer. Journal of Clinical Medicine. ๐Ÿ˜ž

  58. Heusler, I. et al. (2021). Enhanced expression of Galectin-3 in Gestational Diabetes. Nutrition, Metabolism and Cardiovascular Diseases. ๐Ÿ“—

  59. Hiss, S. et al. (2021). Tumour-Infiltrating Lymphocytes (TILs) and PD-L1 Expression Correlate with Lymph Node Metastasis, High-Grade Transformation and Shorter Metastasis-Free Survival in Patients with Acinic Cell Carcinoma (AciCC) of the Salivary Glands. Cancers. ๐Ÿ˜ž

  60. Hรถhn, J. et al. (2021). Combining CNN-based histologic whole slide image analysis and patient data to improve skin cancer classification. European Journal of Cancer. ๐Ÿ“—

  61. Holanek, M. et al. (2021). Neoadjuvant Chemotherapy of Triple-Negative Breast Cancer: Evaluation of Early Clinical Response, Pathological Complete Response Rates, and Addition of Platinum Salts Benefit Based on Real-World Evidence. Cancers. ๐Ÿ“—

  62. Hollingshead, B. D. et al. (2021). An Orthogonal Methods Assessment of Topical Drug Concentrations in Skin and the Impact for Risk Assessment in the Viable Epidermis. Regulatory Toxicology and Pharmacology. ๐Ÿ“—

  63. Holzgreve, A. et al. (2021). PSMA Expression in Glioblastoma as a Basis for Theranostic Approaches: A Retrospective, Correlational Panel Study Including Immunohistochemistry, Clinical Parameters and PET Imaging. Frontiers in Oncology. ๐Ÿ“—

  64. Hong, L. et al. (2021). Multi-omics reveals a relationship between endometrial amino acid metabolism and autophagy in women with recurrent miscarriage. Biology of Reproduction. ๐Ÿ˜ž

  65. Hu, Z. et al. (2021). The Oxford Classic Links Epithelial-to-Mesenchymal Transition to Immunosuppression in Poor Prognosis Ovarian Cancers. Clinical Cancer Research. ๐Ÿ“—

  66. Hubert, P. et al. (2021). Extracellular HMGB1 blockade inhibits tumor growth through profoundly remodeling immune microenvironment and enhances checkpoint inhibitor-based immunotherapy. Journal for ImmunoTherapy of Cancer. ๐Ÿ“—

  67. Huhtakangas, J. A. et al. (2021). A single intra-articular dose of vitamin D analog calcipotriol alleviates synovitis without adverse effects in rats. PLOS ONE. ๐Ÿ“—

  68. Hwang, J-H. et al. (2021). Ex Vivo Live Full-Thickness Porcine Skin Model as a Versatile In Vitro Testing Method for Skin Barrier Research. International Journal of Molecular Sciences. ๐Ÿ“—

  69. Jacobs, S. M. et al. (2021). CXCR4 expression in glioblastoma tissue and the potential for PET imaging and treatment with [68Ga]Ga-Pentixafor /[177Lu]Lu-Pentixather. European Journal of Nuclear Medicine and Molecular Imaging. ๐Ÿ“—

  70. Janic, B. et al. (2021). Therapeutic enhancement of radiation and immunomodulation by gold nanoparticles in triple negative breast cancer. Cancer Biology & Therapy. ๐Ÿ“—

  71. Junttila, A. et al. (2021). Immune cell score, PD-L1 expression and prognosis in esophageal cancer. Acta Oncologica. ๐Ÿ“—

  72. Karnell, J. L. et al. (2021). Depleting plasmacytoid dendritic cells reduces local type I interferon responses and disease activity in patients with cutaneous lupus. Science Translational Medicine. ๐Ÿ˜ž

  73. Kaufmann, J. et al. (2021). Using the R Package Spatstat to Assess Inhibitory Effects of Microregional Hypoxia on the Infiltration of Cancers of the Head and Neck Region by Cytotoxic T Lymphocytes. Cancers. ๐Ÿ“—

  74. Kay, J. E. et al. (2021). Excision of mutagenic replication-blocking lesions suppresses cancer but promotes cytotoxicity and lethality in nitrosamine-exposed mice. Cell Reports. ๐Ÿ“—

  75. Kazdal, D. et al. (2021). Conventional and semi-automatic histopathological analysis of tumor cell content for multigene sequencing of lung adenocarcinoma. Translational Lung Cancer Research. ๐Ÿ“—

  76. Kerselidou, D. et al. (2021). Alternative glycosylation controls endoplasmic reticulum dynamics and tubular extension in mammalian cells. Science Advances. ๐Ÿ˜ž

  77. Kim, B. et al. (2021). Tau immunotherapy is associated with glial responses in FTLD-tau. Acta Neuropathologica. ๐Ÿ“—

  78. Kotlov, N. et al. (2021). Clinical and biological subtypes of B-cell lymphoma revealed by microenvironmental signatures. Cancer Discovery. ๐Ÿ“—

  79. Kurnit, K. C. et al. (2021). Loss of CD73 shifts transforming growth factor-ฮฒ1 (TGF-ฮฒ1) from tumor suppressor to promoter in endometrial cancer. Cancer Letters. ๐Ÿ“—

  80. Kwon, J-T. et al. (2021). An amygdala circuit that suppresses social engagement. Nature. ๐Ÿ“—

  81. Labadie, K. P. et al. (2021). Glypican-3 targeted delivery of 89Zr and 90Y as a theranostic radionuclide platform for hepatocellular carcinoma. Scientific Reports. ๐Ÿ˜ž

  82. Lamont, L. et al. (2021). Quantitative mass spectrometry imaging of drugs and metabolites: a multiplatform comparison. Analytical and Bioanalytical Chemistry. ๐Ÿ˜ž

  83. Lau, C. et al. (2021). The Voronoi theory of the normal liver lobular architecture and its applicability in hepatic zonation. Scientific Reports. ๐Ÿ˜ž

  84. Lee, J. E. et al. (2021). Olig2 regulates p53-mediated apoptosis, migration and invasion of melanoma cells. Scientific Reports. ๐Ÿ˜ž

  85. Lee, M. Y. et al. (2021). Chimeric antigen receptor engineered NK cellular immunotherapy overcomes the selection of T-cell escape variant cancer cells. Journal for ImmunoTherapy of Cancer. ๐Ÿ“—

  86. Levitin, F. et al. (2021). Oxygen-independent disulfide bond formation in VEGF-A and CA9. Journal of Biological Chemistry. ๐Ÿ“—

  87. Li, T. et al. (2021). Endometrial laminin subunit beta-3 expression associates with reproductive outcome in patients with repeated implantation failure. Journal of Assisted Reproduction and Genetics. ๐Ÿ“—

  88. Lin, T.-Y. et al. (2021). Fibroblast dedifferentiation as a determinant of successful regeneration. Developmental Cell. ๐Ÿ“—

  89. Lindquist, K. E. et al. (2021). Difficulties in diagnostics of lung tumours in biopsies: an interpathologist concordance study evaluating the international diagnostic guidelines. Journal of Clinical Pathology. ๐Ÿ˜ž

  90. Liu, X. et al. (2021). Modelling human blastocysts by reprogramming fibroblasts into iBlastoids. Nature. ๐Ÿ“—

  91. Lรณpez-Martรญnez, S. et al. (2021). A Natural Xenogeneic Endometrial Extracellular Matrix Hydrogel Toward Improving Current Human in vitro Models and Future in vivo Applications. Frontiers in Bioengineering and Biotechnology. ๐Ÿ“—

  92. Low, J.-L. et al. (2021). Molecular docking-aided identification of small molecule inhibitors targeting b-catenin-TCF4 interaction. iScience. ๐Ÿ“—

  93. Luchicchi, A. et al. (2021). Axonโ€myelin unit blistering as early event in MS normal appearing white matter. Annals of Neurology. ๐Ÿ˜ž

  94. Mรคkinen, A. et al. (2021). IGF2BP3 Associates with Proliferative Phenotype and Prognostic Features in B-Cell Acute Lymphoblastic Leukemia. Cancers. ๐Ÿ“—

  95. Mahbod, A. et al. (2021). CryoNuSeg: A dataset for nuclei instance segmentation of cryosectioned H&E-stained histological images. Computers in Biology and Medicine. ๐Ÿ˜ž

  96. Martin, L. et al. (2021). Induction of contralateral hepatic hypertrophy by unilobar 90Y transarterial radioembolization vs. portal vein embolization: an animal study. Journal of Vascular and Interventional Radiology. ๐Ÿ˜ž

  97. Martin, S. K. et al. (2021). Disruption of DNA polymerase ฮถ engages an innate immune response. Cell Reports. ๐Ÿ˜ž

  98. Matikas, A. et al. (2021). Prognostic role of serum thymidine kinase 1 kinetics during neoadjuvant chemotherapy for early breast cancer. ESMO Open. ๐Ÿ“—

  99. McElvain, L. E. et al. (2021). Specific populations of basal ganglia output neurons target distinct brain stem areas while collateralizing throughout the diencephalon. Neurone. ๐Ÿ“—

  100. Mihola, O. et al. (2021). Rat PRDM9 shapes recombination landscapes, duration of meiosis, gametogenesis, and age of fertility. BMC Biology. ๐Ÿ“—

  101. Mirra, S. et al. (2021). ARMCX3 Mediates Susceptibility to Hepatic Tumorigenesis Promoted by Dietary Lipotoxicity. Cancers. ๐Ÿ˜ž

  102. Mo, Y.-Q. et al. (2021). Ultrasonography predicts the results of labial salivary gland biopsy in patients with suspected Sjรถgrenโ€™s syndrome: a matrix risk model. Therapeutic Advances in Musculoskeletal Disease. ๐Ÿ˜ž

  103. Monserrat, J. et al. (2021). Disruption of the MSL complex inhibits tumour maintenance by exacerbating chromosomal instability. Nature Cell Biology. ๐Ÿ˜ž

  104. Moon, C. S. et al. (2021). FYNโ€“TRAF3IP2 induces NF-ฮบB signaling-driven peripheral T-cell lymphoma. Nature Cancer. ๐Ÿ˜ž

  105. Moore, M. R. et al. (2021). Automated digital TIL analysis (ADTA) adds prognostic value to standard assessment of depth and ulceration in primary melanoma. Scientific Reports. ๐Ÿ“—

  106. Mori, H. et al. (2021). Characterizing the Tumor Immune Microenvironment with Tyramide-Based Multiplex Immunofluorescence. Journal of Mammary Gland Biology and Neoplasia. ๐Ÿ“—

  107. Muiรฑo, E. et al. (2021). Genome-wide transcriptome study in skin biopsies reveals an association of E2F4 with cadasil and cognitive impairment. Scientific Reports. ๐Ÿ“—

  108. Mulholland, M. et al. (2021). IL-2Rฮฒฮณ signalling in lymphocytes promotes systemic inflammation and reduces plasma cholesterol in atherosclerotic mice. Atherosclerosis. ๐Ÿ“—

  109. Mullen, P. J. et al. (2021). SARS-CoV-2 infection rewires host cell metabolism and is potentially susceptible to mTORC1 inhibition. Nature Communications. ๐Ÿ˜ž

  110. Muรฑoz, N. M. et al. (2021). Influence of injection technique, drug formulation and tumor microenvironment on intratumoral immunotherapy delivery and efficacy. Journal for ImmunoTherapy of Cancer. ๐Ÿ“—

  111. Mylonas, K. J. et al. (2021). Cellular senescence inhibits renal regeneration after injury in mice, with senolytic treatment promoting repair. Science Translational Medicine. ๐Ÿ“—

  112. Ni, H. et al. (2021). SATB2 defect promotes colitis and colitis-associated colorectal cancer by impairing Cl- /HCO3- exchange and homeostasis of gut microbiota. Journal of Crohn's and Colitis. ๐Ÿ“—

  113. Nortunen, M. et al. (2021). Pathophysiology of reflux oesophagitis: role of Toll-like receptors 2 and 4 and Farnesoid X receptor. Virchows Archiv. ๐Ÿ“—

  114. Novelli, G. et al. (2021). Inhibition of HECT E3 ligases as potential therapy for COVID-19. Cell Death & Disease. ๐Ÿ˜ž

  115. Neumann, J. M. et al. (2021). A new technological approach in diagnostic pathology: mass spectrometry imaging-based metabolomics for biomarker detection in urachal cancer. Laboratory Investigation. ๐Ÿ“—

  116. O'Grady, N. et al. (2021). PRoBE the cloud toolkit: finding the best biomarkers of drug response within a breast cancer clinical trial. JAMIA Open. ๐Ÿ“—

  117. Oh, K. S. et al. (2021). Cellular senescence evaluated by P16INK4a immunohistochemistry is a prevalent phenomenon in advanced calcific aortic valve disease. Cardiovascular Pathology. ๐Ÿ“—

  118. Olpe, C. et al. (2021). A diffusion-like process accommodates new crypts during clonal expansion in human colonic epithelium. Gastroenterology. ๐Ÿ“—

  119. Paik, S. et al. (2021). Systematic evaluation of scoring methods for Ki67 as a surrogate for 21-gene recurrence score. npj Breast Cancer. ๐Ÿ“—

  120. Paradis, J. S. et al. (2021). Synthetic Lethal Screens Reveal Co-Targeting FAK and MEK as a Multimodal Precision Therapy for GNAQ-Driven Uveal Melanoma. Clinical Cancer Research. ๐Ÿ“—

  121. Pei, J. et al. (2021). Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations. Clinical Epigenetics. ๐Ÿ˜ž

  122. Peixoto-Santos, J. E. et al. (2021). Neuropathology of the 21th century for the Latin American epilepsy community. Seizure. ๐Ÿ“—

  123. Pennanen, P. et al. (2021). Signaling pathways in human osteoclasts differentiation: ERK1/2 as a key player. Molecular Biology Reports. ๐Ÿ“—

  124. Petruk, N. et al. (2021). CD73 facilitates EMT progression and promotes lung metastases in triple-negative breast cancer. Scientific Reports. ๐Ÿ“—

  125. Picon, C. et al. (2021). Neuron-specific activation of necroptosis signaling in multiple sclerosis cortical grey matter. Acta Neuropathologica. ๐Ÿ˜ž

  126. Quaas, A. et al. (2021). Sex-specific prognostic effect of CD66b-positive tumor-infiltrating neutrophils (TANs) in gastric and esophageal adenocarcinoma. Gastric Cancer. ๐Ÿ“—

  127. Rakaee, M. et al. (2021). Tertiary lymphoid structure score: a promising approach to refine the TNM staging in resected non-small cell lung cancer. British Journal of Cancer. ๐Ÿ˜ž

  128. Ray, R. M. et al. (2021). Enhanced target cell specificity and uptake of lipid nanoparticles using RNA aptamers and peptides. Beilstein Journal of Organic Chemistry. ๐Ÿ“—

  129. Reischl, S. et al. (2021). Ac2-26-Nanoparticles Induce Resolution of Intestinal Inflammation and Anastomotic Healing via Inhibition of NF-ฮบB Signaling in a Model of Perioperative Colitis. Inflammatory Bowel Diseases. ๐Ÿ“—

  130. Riese, J. et al. (2021). Sphingosine-1-Phosphate Receptor Type 4 (S1P4) Is Differentially Regulated in Peritoneal B1 B Cells upon TLR4 Stimulation and Facilitates the Egress of Peritoneal B1a B Cells and Subsequent Accumulation of Splenic IRA B Cells under Inflammatory Conditions. International Journal of Molecular Sciences. ๐Ÿ“—

  131. Rogers, R. G. et al. (2021). Cardiosphere-derived cells, with and without a biological scaffold, stimulate myogenesis and recovery of muscle function in mice with volumetric muscle loss. Biomaterials. ๐Ÿ˜ž

  132. Sadras, T. et al. (2021). Developmental partitioning of SYK and ZAP70 prevents autoimmunity and cancer. Molecular Cell. ๐Ÿ“—

  133. Saghafinia, S. et al. (2021). Cancer cells retrace a stepwise differentiation program during malignant progression. Cancer Discovery. ๐Ÿ“—

  134. Sajiki, Y. et al. (2021). Tick saliva-induced programmed death-1 and PD-ligand 1 and its related host immunosuppression. Scientific Reports. ๐Ÿ˜ž

  135. Salmi, L. et al. (2021). Growth Arrest-Specific Gene 6 Administration Ameliorates Sepsis-Induced Organ Damage in Mice and Reduces ROS Formation In Vitro. Cells. ๐Ÿ˜ž

  136. Samain, R. et al. (2021). Pharmacological normalization of pancreatic cancer-associated fibroblast secretome impairs pro-metastatic cross-talk with macrophages. Cellular and Molecular Gastroenterology and Hepatology. ๐Ÿ˜ž

  137. Schupp, J. et al. (2021). In-Depth Immune-Oncology Studies of the Tumor Microenvironment in a Humanized Melanoma Mouse Model. International Journal of Molecular Sciences. ๐Ÿ“—

  138. Selven, H. et al. (2021). High expression of microRNA-126 relates to favorable prognosis for colon cancer patients. Scientific Reports. ๐Ÿ“—

  139. Seok, J. Y. et al. (2021). Diagnostic Utility of INSM1 in Medullary Thyroid Carcinoma. International Journal of Surgical Pathology. ๐Ÿ“—

  140. Shamseddin, M. et al. (2021). Contraceptive progestins with androgenic properties stimulate breast epithelial cell proliferation. EMBO Molecular Medicine. ๐Ÿ“—

  141. Shi, L. et al. (2021). A KRAS-responsive long non-coding RNA controls microRNA processing. Nature Communications. ๐Ÿ˜ž

  142. Shinde-Jadhav, S. et al. (2021). Role of neutrophil extracellular traps in radiation resistance of invasive bladder cancer. Nature Communications. ๐Ÿ“—

  143. Shinizu, Y. et al. (2021). Exposure to Maternal Immune Activation Causes Congenital Unfolded Protein Response Defects and Increases the Susceptibility to Postnatal Inflammatory Stimulation in Offspring. Journal of Inflammation Research. ๐Ÿ“—

  144. Shochet, G. E. et al. (2021). Hypoxia Inducible Factor 1A Supports a Pro-Fibrotic Phenotype Loop in Idiopathic Pulmonary Fibrosis. International Journal of Molecular Sciences. ๐Ÿ“—

  145. Siddiqui, Z. et al. (2021). Angiogenic Hydrogels for Dental Pulp Revascularization. Acta Biomaterialia. ๐Ÿ“—

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