nnUNet_find_best_configuration - nntrongnghia/TDSI21-Shoulder-Muscle-Segmentation GitHub Wiki

Main steps

It doesn't do what it says in nnUNet_find_best_configuration -h, so be aware! So here are some main steps of what it does:

  1. Determine the final postprocessing after all five folds are completed.
  2. Get the mean dice of each model declared in argument -m
  3. Get the mean dice of every combination of 2 models
  4. Determine the best model of ensemble of 2 models
  5. Display and save command lines to run the inference in RESULT_FOLDER/ENSEMBLE_NAME/prediction_commands.txt
  6. Save mean dice of all models and ensembles in RESULT_FOLDER/ENSEMBLE_NAME/summary.csv