Page Index - ncbi/BAMscale GitHub Wiki

37 page(s) in this GitHub Wiki:

• Home
• Manual For Use
• Detailed Tutorials
• Benchmarking
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• Brief Examples
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• Detailed usage: RNA seq coverage tracks
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• Detailed Use: Generating Scaled Coverage Tracks
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• Detailed Use: OKseq RFD (Replication Fork Directionality) Track Generation
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• Detailed Use: Processing END seq Data
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• Detailed Use: Quantifying Peak Coverages from Multiple BAM Files
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• Detailed Use: Replication Timing log2 Coverage Ratio from Two BAM Files
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• Detailed Use: Smooth Coverage Tracks
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• Finding OK seq strand switched from the RFD track
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• Installation
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• Main_Sidebar
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• Manuals
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• Pairwise comparison of peaks [interactive plotting using R]
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• Peak Quantifying
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• Replication timing BED segments from bigwig
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• Scaling BAM Files from DNAseq Data
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