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Documentation
Public interface
Everything is in namespace gbwtgraph. Use linker option -lgbwtgraph to link against the GBWTGraph library.
Main interface
- gbwtgraph.h: GBWTGraph interface
- Includes utils.h
- gbz.h: GBZ file format
- Includes gbwtgraph.h
- minimizer.h: Minimizer index interface
- Includes utils.h
Construction
- gfa.h: GBWTGraph construction from GFA
- Includes gbwtgraph.h
- index.h: Minimizer index construction from GBWTGraph
- Includes gbwtgraph.h
- Includes minimizer.h
- path_cover.h: GBWT construction from a greedy path cover of a graph
- Includes gbwtgraph.h
Utilities
- algorithms.h: Graph algorithms
- Includes gbwtgraph.h
- cached_gbwtgraph.h: Cached GBWTGraph interface
- Includes gbwtgraph.h
- subgraph.h: Subgraph queries
- Includes gbz.h
- utils.h: Utilities and definitions