Infectious Respiratory Disease Pathogen Diagnosis - isaric4c/wiki GitHub Wiki

Variable / Field Name Section Header Field Type Field Label Choices or Calculations
mbperf PATHOGEN TESTING radio Was pathogen testing done during this illness episode? Pathogen testing is available as a repeating instrument in the next section radio, Required 1 YES 1, Yes ; 2, No ; 3, N/A
cov19sars_mbyn_v2 radio COVID-19 / SARS-CoV-2 2, Tested and POSITIVE ; 1, Tested and NEGATIVE ; 0, NOT TESTED
influ_mbyn radio Influenza: 2, YES - Confirmed ; 1, YES - Probable ; 0, NO
influ_mbyn_v2 radio Influenza 2, Tested and POSITIVE ; 1, Tested and NEGATIVE ; 0, NOT TESTED
influ_mbcat radio If Yes to Influenza 1, A/H3N2 ; 2, A/H1N1pdm09 ; 3, A/H7N9 ; 4, A/H5N1 ; 5, A - not typed ; 7, Other A ; 6, B - not typed ; 888, Other
influothera_mborres text Other influenza A, specify:
influother_mborres text Other influenza, specify:
influenza_text text NB: Please do not enter Haemophilus influenza or parainfluenza above here - enter them under 'other' below
corna_mbcat radio Coronavirus: 2, YES - Confirmed ; 1, YES - Probable ; 0, NO
corna_mbcaty radio If Yes to Coronavirus: 1, MERS-CoV ; 2, 2019nCoV ; 3, COVID-19/SARS-CoV-2 2019 ; 888, Other CoV
coronaother_mborres text IF Other coronavirus; Specify:
rsv_mbcat radio RSV 2, YES - Confirmed ; 1, YES - Probable ; 0, NO
rsv_mbcat_v2 radio Respiratory syncytial virus (RSV) 2, Tested and POSITIVE ; 1, Tested and NEGATIVE ; 0, NOT TESTED
adeno_mbcat radio Adenovirus: 2, YES - Confirmed ; 1, YES - Probable ; 0, NO
adeno_mbcat_v2 radio Adenovirus 2, Tested and POSITIVE ; 1, Tested and NEGATIVE ; 0, NOT TESTED
bact_mborres radio Bacteria 1, YES - Confirmed ; 2, NO
bacteria_mborres text If yes, specify bacteria (list all below)
clinicalpneu_mborres dropdown Clinical pneumonia: 1, Yes ; 0, No ; 2, Unknown
infectuk_mborres dropdown IF NONE OF THE ABOVE: Suspected Non-infective: 1, Yes ; 2, N/A
pcr_path_diag checkbox Other respiratory PCR-diagnosed pathogens Tick all that apply 0, pcr_path_diag___0 None positive ; 1, pcr_path_diag___1 Mycoplasma pneumoniae positive ; 2, pcr_path_diag___2 Legionella species (L. pneumophila or L. longbeachae) positive ; 3, pcr_path_diag___3 Metapneumovirus positive ; 4, pcr_path_diag___4 Parainfluenza virus positive ; 5, pcr_path_diag___5 Coronavirus HKU1/OC43/229E/NL63 (**NOT COVID-19**) positive ; 6, pcr_path_diag___6 Bocavirus positive ; 10, pcr_path_diag___10 Other - please specify
pcr_path_diago text If selected Yes for Other respiratory PCR-diagnosed pathogen, specify
other_mbyn radio Other Infectious Respiratory Diagnosis: (complete for PRE_v9.7 CRF only) 2, YES - Confirmed ; 1, YES - Probable ; 0, NO
other_mborres text If YES: Other infectious respiratory diagnosis, specify:
infectious_respiratory_disease_pathogen_diagnosis_complete Form Status dropdown Infectious Respiratory Disease Pathogen Diagnosis section complete? 0, Incomplete ; 1, Unverified ; 2, Complete