x86_64 default multiomics notebook d19c1ef453d4 - huchlab/sequencing-docker-stacks GitHub Wiki
- Build timestamp: 2025-11-06T11:18:01Z
- Docker image:
quay.io/huchlab/multiomics-notebook:d19c1ef453d4 - Docker image size: 9.36GB
- Git commit SHA: d19c1ef453d4c17970ab450e2db5a838e241f570
- Git commit message:
Merge pull request #325 from huchlab/copilot/install-fa2-modified-package
Add fa2_modified package to singlecell-notebook
Python 3.13.9
conda info:
active environment : None
user config file : /home/jovyan/.condarc
populated config files : /opt/conda/.condarc
/home/jovyan/.condarc
conda version : 25.9.1
conda-build version : not installed
python version : 3.13.9.final.0
solver : libmamba (default)
virtual packages : __archspec=1=zen2
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__unix=0=0
base environment : /opt/conda (writable)
conda av data dir : /opt/conda/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
package cache : /opt/conda/pkgs
/home/jovyan/.conda/pkgs
envs directories : /opt/conda/envs
/home/jovyan/.conda/envs
platform : linux-64
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UID:GID : 1000:100
netrc file : None
offline mode : False
mamba info:
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mamba version : 2.3.3
curl version : libcurl/8.16.0 OpenSSL/3.5.4 zlib/1.3.1 zstd/1.5.7 libssh2/1.11.1 nghttp2/1.67.0
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envs directories : /opt/conda/envs
package cache : /opt/conda/pkgs
/home/jovyan/.mamba/pkgs
environment : base
env location : /opt/conda
user config files : /home/jovyan/.mambarc
populated config files : /home/jovyan/.condarc
/opt/conda/.condarc
virtual packages : __unix=0=0
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channels : https://conda.anaconda.org/conda-forge/linux-64
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https://conda.anaconda.org/bioconda/linux-64
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base environment : /opt/conda
platform : linux-64
mamba list:
List of packages in environment: "/opt/conda"
Name Version Build Channel
──────────────────────────────────────────────────────────────────────────────────────────────
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traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
truststore 0.10.3 pyhe01879c_0 conda-forge
typing-extensions 4.15.0 h396c80c_0 conda-forge
typing-inspection 0.4.2 pyhd8ed1ab_0 conda-forge
typing_extensions 4.15.0 pyhcf101f3_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025b h78e105d_0 conda-forge
tzlocal 5.3.1 pyh8f84b5b_0 conda-forge
ucc 1.5.1 hb729f83_0 conda-forge
ucx 1.19.0 h63b5c0b_5 conda-forge
umap-learn 0.5.9.post2 py313h78bf25f_0 conda-forge
unixodbc 2.3.12 h661eb56_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
urllib3 2.5.0 pyhd8ed1ab_0 conda-forge
uv 0.9.7 h30787bc_0 conda-forge
wcwidth 0.2.14 pyhd8ed1ab_0 conda-forge
webcolors 25.10.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.9.0 pyhd8ed1ab_0 conda-forge
werkzeug 3.1.3 pyhd8ed1ab_1 conda-forge
widgetsnbextension 4.0.15 pyhd8ed1ab_0 conda-forge
wrapt 2.0.0 py313h07c4f96_0 conda-forge
xarray 2025.10.1 pyhd8ed1ab_0 conda-forge
xgboost 3.1.1 cpu_pyhb39878e_0 conda-forge
xlrd 2.0.2 pyhd8ed1ab_0 conda-forge
xmltodict 1.0.2 pyhcf101f3_0 conda-forge
xorg-libice 1.1.2 hb9d3cd8_0 conda-forge
xorg-libsm 1.2.6 he73a12e_0 conda-forge
xorg-libx11 1.8.12 h4f16b4b_0 conda-forge
xorg-libxau 1.0.12 hb9d3cd8_0 conda-forge
xorg-libxdmcp 1.1.5 hb9d3cd8_0 conda-forge
xorg-libxext 1.3.6 hb9d3cd8_0 conda-forge
xorg-libxrender 0.9.12 hb9d3cd8_0 conda-forge
xorg-libxt 1.3.1 hb9d3cd8_0 conda-forge
xyzservices 2025.10.0 pyhd8ed1ab_0 conda-forge
yaml 0.2.5 h280c20c_3 conda-forge
yaml-cpp 0.8.0 h3f2d84a_0 conda-forge
yarl 1.22.0 py313h3dea7bd_0 conda-forge
yq 3.4.3 pyhe01879c_2 conda-forge
zarr 3.1.3 pyhcf101f3_0 conda-forge
zeromq 4.3.5 h387f397_9 conda-forge
zfp 1.0.1 h909a3a2_3 conda-forge
zict 3.0.0 pyhd8ed1ab_1 conda-forge
zipp 3.23.0 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 hb9d3cd8_2 conda-forge
zlib-ng 2.2.5 hde8ca8f_0 conda-forge
zstandard 0.25.0 py313h54dd161_0 conda-forge
zstd 1.5.7 hb8e6e7a_2 conda-forge
apt list --installed:
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Listing...
adduser/now 3.137ubuntu1 all [installed,local]
apt/now 2.8.3 amd64 [installed,local]
base-files/now 13ubuntu10.3 amd64 [installed,local]
base-passwd/now 3.6.3build1 amd64 [installed,local]
bash/now 5.2.21-2ubuntu4 amd64 [installed,local]
binutils-common/now 2.42-4ubuntu2.6 amd64 [installed,local]
binutils-x86-64-linux-gnu/now 2.42-4ubuntu2.6 amd64 [installed,local]
binutils/now 2.42-4ubuntu2.6 amd64 [installed,local]
bsdutils/now 1:2.39.3-9ubuntu6.3 amd64 [installed,local]
build-essential/now 12.10ubuntu1 amd64 [installed,local]
bzip2/now 1.0.8-5.1build0.1 amd64 [installed,local]
ca-certificates/now 20240203 all [installed,local]
cm-super-minimal/now 0.3.4-17 all [installed,local]
cm-super/now 0.3.4-17 all [installed,local]
coreutils/now 9.4-3ubuntu6.1 amd64 [installed,local]
cpp-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
cpp-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
cpp-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
cpp/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
curl/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
dash/now 0.5.12-6ubuntu5 amd64 [installed,local]
debconf/now 1.5.86ubuntu1 all [installed,local]
debianutils/now 5.17build1 amd64 [installed,local]
diffutils/now 1:3.10-1build1 amd64 [installed,local]
dpkg-dev/now 1.22.6ubuntu6.5 all [installed,local]
dpkg/now 1.22.6ubuntu6.5 amd64 [installed,local]
dvipng/now 1.15-1.1 amd64 [installed,local]
e2fsprogs/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
ffmpeg/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
findutils/now 4.9.0-5build1 amd64 [installed,local]
fontconfig-config/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
fontconfig/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
fonts-dejavu-core/now 2.37-8 all [installed,local]
fonts-dejavu-extra/now 2.37-8 all [installed,local]
fonts-dejavu-mono/now 2.37-8 all [installed,local]
fonts-dejavu/now 2.37-8 all [installed,local]
fonts-liberation/now 1:2.1.5-3 all [installed,local]
fonts-lmodern/now 2.005-1 all [installed,local]
fonts-urw-base35/now 20200910-8 all [installed,local]
g++-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
g++-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
g++-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
g++/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gcc-13-base/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gcc-14-base/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
gcc-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gcc/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gfortran-13-x86-64-linux-gnu/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gfortran-13/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
gfortran-x86-64-linux-gnu/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
gfortran/now 4:13.2.0-7ubuntu1 amd64 [installed,local]
ghostscript/now 10.02.1~dfsg1-0ubuntu7.8 amd64 [installed,local]
git-lfs/now 3.4.1-1ubuntu0.3 amd64 [installed,local]
git-man/now 1:2.43.0-1ubuntu7.3 all [installed,local]
git/now 1:2.43.0-1ubuntu7.3 amd64 [installed,local]
gpgv/now 2.4.4-2ubuntu17.3 amd64 [installed,local]
grep/now 3.11-4build1 amd64 [installed,local]
gzip/now 1.12-1ubuntu3.1 amd64 [installed,local]
hostname/now 3.23+nmu2ubuntu2 amd64 [installed,local]
init-system-helpers/now 1.66ubuntu1 all [installed,local]
less/now 590-2ubuntu2.1 amd64 [installed,local]
libacl1/now 2.3.2-1build1.1 amd64 [installed,local]
libaom3/now 3.8.2-2ubuntu0.1 amd64 [installed,local]
libapache-pom-java/now 29-2 all [installed,local]
libapparmor1/now 4.0.1really4.0.1-0ubuntu0.24.04.4 amd64 [installed,local]
libapt-pkg6.0t64/now 2.8.3 amd64 [installed,local]
libasan8/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libasound2-data/now 1.2.11-1ubuntu0.1 all [installed,local]
libasound2t64/now 1.2.11-1ubuntu0.1 amd64 [installed,local]
libass9/now 1:0.17.1-2build1 amd64 [installed,local]
libassuan0/now 2.5.6-1build1 amd64 [installed,local]
libasyncns0/now 0.8-6build4 amd64 [installed,local]
libatomic1/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libattr1/now 1:2.5.2-1build1.1 amd64 [installed,local]
libaudit-common/now 1:3.1.2-2.1build1.1 all [installed,local]
libaudit1/now 1:3.1.2-2.1build1.1 amd64 [installed,local]
libavahi-client3/now 0.8-13ubuntu6 amd64 [installed,local]
libavahi-common-data/now 0.8-13ubuntu6 amd64 [installed,local]
libavahi-common3/now 0.8-13ubuntu6 amd64 [installed,local]
libavc1394-0/now 0.5.4-5build3 amd64 [installed,local]
libavcodec60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavdevice60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavfilter9/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavformat60/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libavutil58/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libbinutils/now 2.42-4ubuntu2.6 amd64 [installed,local]
libblas3/now 3.12.0-3build1.1 amd64 [installed,local]
libblkid1/now 2.39.3-9ubuntu6.3 amd64 [installed,local]
libbluray2/now 1:1.3.4-1build1 amd64 [installed,local]
libbrotli1/now 1.1.0-2build2 amd64 [installed,local]
libbs2b0/now 3.1.0+dfsg-7build1 amd64 [installed,local]
libbsd0/now 0.12.1-1build1.1 amd64 [installed,local]
libbz2-1.0/now 1.0.8-5.1build0.1 amd64 [installed,local]
libc-bin/now 2.39-0ubuntu8.6 amd64 [installed,local]
libc-dev-bin/now 2.39-0ubuntu8.6 amd64 [installed,local]
libc6-dev/now 2.39-0ubuntu8.6 amd64 [installed,local]
libc6/now 2.39-0ubuntu8.6 amd64 [installed,local]
libcaca0/now 0.99.beta20-4build2 amd64 [installed,local]
libcairo-gobject2/now 1.18.0-3build1 amd64 [installed,local]
libcairo2/now 1.18.0-3build1 amd64 [installed,local]
libcap-ng0/now 0.8.4-2build2 amd64 [installed,local]
libcap2/now 1:2.66-5ubuntu2.2 amd64 [installed,local]
libcbor0.10/now 0.10.2-1.2ubuntu2 amd64 [installed,local]
libcc1-0/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libcdio-cdda2t64/now 10.2+2.0.1-1.1build2 amd64 [installed,local]
libcdio-paranoia2t64/now 10.2+2.0.1-1.1build2 amd64 [installed,local]
libcdio19t64/now 2.1.0-4.1ubuntu1.2 amd64 [installed,local]
libchromaprint1/now 1.5.1-5 amd64 [installed,local]
libcjson1/now 1.7.17-1 amd64 [installed,local]
libcodec2-1.2/now 1.2.0-2build1 amd64 [installed,local]
libcom-err2/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
libcommons-logging-java/now 1.3.0-1ubuntu1 all [installed,local]
libcommons-parent-java/now 56-1 all [installed,local]
libcrypt-dev/now 1:4.4.36-4build1 amd64 [installed,local]
libcrypt1/now 1:4.4.36-4build1 amd64 [installed,local]
libctf-nobfd0/now 2.42-4ubuntu2.6 amd64 [installed,local]
libctf0/now 2.42-4ubuntu2.6 amd64 [installed,local]
libcups2t64/now 2.4.7-1.2ubuntu7.4 amd64 [installed,local]
libcurl3t64-gnutls/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
libcurl4t64/now 8.5.0-2ubuntu10.6 amd64 [installed,local]
libdatrie1/now 0.2.13-3build1 amd64 [installed,local]
libdav1d7/now 1.4.1-1build1 amd64 [installed,local]
libdb5.3t64/now 5.3.28+dfsg2-7 amd64 [installed,local]
libdbus-1-3/now 1.14.10-4ubuntu4.1 amd64 [installed,local]
libdc1394-25/now 2.2.6-4build1 amd64 [installed,local]
libde265-0/now 1.0.15-1build3 amd64 [installed,local]
libdebconfclient0/now 0.271ubuntu3 amd64 [installed,local]
libdecor-0-0/now 0.2.2-1build2 amd64 [installed,local]
libdeflate0/now 1.19-1build1.1 amd64 [installed,local]
libdpkg-perl/now 1.22.6ubuntu6.5 all [installed,local]
libdrm-amdgpu1/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libdrm-common/now 2.4.122-1~ubuntu0.24.04.1 all [installed,local]
libdrm-intel1/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libdrm2/now 2.4.122-1~ubuntu0.24.04.1 amd64 [installed,local]
libedit2/now 3.1-20230828-1build1 amd64 [installed,local]
libelf1t64/now 0.190-1.1ubuntu0.1 amd64 [installed,local]
liberror-perl/now 0.17029-2 all [installed,local]
libexpat1/now 2.6.1-2ubuntu0.3 amd64 [installed,local]
libext2fs2t64/now 1.47.0-2.4~exp1ubuntu4.1 amd64 [installed,local]
libffi8/now 3.4.6-1build1 amd64 [installed,local]
libfftw3-double3/now 3.3.10-1ubuntu3 amd64 [installed,local]
libfido2-1/now 1.14.0-1build3 amd64 [installed,local]
libflac12t64/now 1.4.3+ds-2.1ubuntu2 amd64 [installed,local]
libflite1/now 2.2-6build3 amd64 [installed,local]
libfontbox-java/now 1:1.8.16-5 all [installed,local]
libfontconfig1/now 2.15.0-1.1ubuntu2 amd64 [installed,local]
libfontenc1/now 1:1.1.8-1build1 amd64 [installed,local]
libfreetype6/now 2.13.2+dfsg-1build3 amd64 [installed,local]
libfribidi0/now 1.0.13-3build1 amd64 [installed,local]
libgbm1/now 25.0.7-0ubuntu0.24.04.2 amd64 [installed,local]
libgcc-13-dev/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
libgcc-s1/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libgcrypt20/now 1.10.3-2build1 amd64 [installed,local]
libgd3/now 2.3.3-9ubuntu5 amd64 [installed,local]
libgdbm-compat4t64/now 1.23-5.1build1 amd64 [installed,local]
libgdbm6t64/now 1.23-5.1build1 amd64 [installed,local]
libgdk-pixbuf-2.0-0/now 2.42.10+dfsg-3ubuntu3.2 amd64 [installed,local]
libgdk-pixbuf2.0-common/now 2.42.10+dfsg-3ubuntu3.2 all [installed,local]
libgfortran-13-dev/now 13.3.0-6ubuntu2~24.04 amd64 [installed,local]
libgfortran5/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libgl1-mesa-dri/now 25.0.7-0ubuntu0.24.04.2 amd64 [installed,local]
libgl1/now 1.7.0-1build1 amd64 [installed,local]
libglib2.0-0t64/now 2.80.0-6ubuntu3.4 amd64 [installed,local]
libglvnd0/now 1.7.0-1build1 amd64 [installed,local]
libglx-mesa0/now 25.0.7-0ubuntu0.24.04.2 amd64 [installed,local]
libglx0/now 1.7.0-1build1 amd64 [installed,local]
libgme0/now 0.6.3-7build1 amd64 [installed,local]
libgmp10/now 2:6.3.0+dfsg-2ubuntu6.1 amd64 [installed,local]
libgnutls30t64/now 3.8.3-1.1ubuntu3.4 amd64 [installed,local]
libgomp1/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libgpg-error0/now 1.47-3build2.1 amd64 [installed,local]
libgprofng0/now 2.42-4ubuntu2.6 amd64 [installed,local]
libgraphite2-3/now 1.3.14-2build1 amd64 [installed,local]
libgs-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10-common/now 10.02.1~dfsg1-0ubuntu7.8 all [installed,local]
libgs10/now 10.02.1~dfsg1-0ubuntu7.8 amd64 [installed,local]
libgsm1/now 1.0.22-1build1 amd64 [installed,local]
libgssapi-krb5-2/now 1.20.1-6ubuntu2.6 amd64 [installed,local]
libharfbuzz0b/now 8.3.0-2build2 amd64 [installed,local]
libheif-plugin-aomdec/now 1.17.6-1ubuntu4.1 amd64 [installed,local]
libheif-plugin-libde265/now 1.17.6-1ubuntu4.1 amd64 [installed,local]
libheif1/now 1.17.6-1ubuntu4.1 amd64 [installed,local]
libhogweed6t64/now 3.9.1-2.2build1.1 amd64 [installed,local]
libhwasan0/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libhwy1t64/now 1.0.7-8.1build1 amd64 [installed,local]
libice6/now 2:1.0.10-1build3 amd64 [installed,local]
libicu74/now 74.2-1ubuntu3.1 amd64 [installed,local]
libidn12/now 1.42-1build1 amd64 [installed,local]
libidn2-0/now 2.3.7-2build1.1 amd64 [installed,local]
libiec61883-0/now 1.2.0-6build1 amd64 [installed,local]
libijs-0.35/now 0.35-15.1build1 amd64 [installed,local]
libisl23/now 0.26-3build1.1 amd64 [installed,local]
libitm1/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
libjack-jackd2-0/now 1.9.21~dfsg-3ubuntu3 amd64 [installed,local]
libjansson4/now 2.14-2build2 amd64 [installed,local]
libjbig0/now 2.1-6.1ubuntu2 amd64 [installed,local]
libjbig2dec0/now 0.20-1build3 amd64 [installed,local]
libjpeg-turbo8/now 2.1.5-2ubuntu2 amd64 [installed,local]
libjpeg8/now 8c-2ubuntu11 amd64 [installed,local]
libjxl0.7/now 0.7.0-10.2ubuntu6.1 amd64 [installed,local]
libk5crypto3/now 1.20.1-6ubuntu2.6 amd64 [installed,local]
libkeyutils1/now 1.6.3-3build1 amd64 [installed,local]
libkpathsea6/now 2023.20230311.66589-9build3 amd64 [installed,local]
libkrb5-3/now 1.20.1-6ubuntu2.6 amd64 [installed,local]
libkrb5support0/now 1.20.1-6ubuntu2.6 amd64 [installed,local]
liblapack3/now 3.12.0-3build1.1 amd64 [installed,local]
liblcms2-2/now 2.14-2build1 amd64 [installed,local]
libldap2/now 2.6.7+dfsg-1~exp1ubuntu8.2 amd64 [installed,local]
liblerc4/now 4.0.0+ds-4ubuntu2 amd64 [installed,local]
liblilv-0-0/now 0.24.22-1build1 amd64 [installed,local]
libllvm20/now 1:20.1.2-0ubuntu1~24.04.2 amd64 [installed,local]
liblsan0/now 14.2.0-4ubuntu2~24.04 amd64 [installed,local]
liblua5.4-0/now 5.4.6-3build2 amd64 [installed,local]
liblz4-1/now 1.9.4-1build1.1 amd64 [installed,local]
liblzma5/now 5.6.1+really5.4.5-1ubuntu0.2 amd64 [installed,local]
libmbedcrypto7t64/now 2.28.8-1 amd64 [installed,local]
libmd0/now 1.1.0-2build1.1 amd64 [installed,local]
libmount1/now 2.39.3-9ubuntu6.3 amd64 [installed,local]
libmp3lame0/now 3.100-6build1 amd64 [installed,local]
libmpc3/now 1.3.1-1build1.1 amd64 [installed,local]
libmpfr6/now 4.2.1-1build1.1 amd64 [installed,local]
libmpg123-0t64/now 1.32.5-1ubuntu1.1 amd64 [installed,local]
libmysofa1/now 1.3.2+dfsg-2ubuntu2 amd64 [installed,local]
libncursesw6/now 6.4+20240113-1ubuntu2 amd64 [installed,local]
libnettle8t64/now 3.9.1-2.2build1.1 amd64 [installed,local]
libnghttp2-14/now 1.59.0-1ubuntu0.2 amd64 [installed,local]
libnorm1t64/now 1.5.9+dfsg-3.1build1 amd64 [installed,local]
libnpth0t64/now 1.6-3.1build1 amd64 [installed,local]
libnuma1/now 2.0.18-1build1 amd64 [installed,local]
libogg0/now 1.3.5-3build1 amd64 [installed,local]
libopenal-data/now 1:1.23.1-4build1 all [installed,local]
libopenal1/now 1:1.23.1-4build1 amd64 [installed,local]
libopenjp2-7/now 2.5.0-2ubuntu0.4 amd64 [installed,local]
libopenmpt0t64/now 0.7.3-1.1build3 amd64 [installed,local]
libopus0/now 1.4-1build1 amd64 [installed,local]
libp11-kit0/now 0.25.3-4ubuntu2.1 amd64 [installed,local]
libpam-modules-bin/now 1.5.3-5ubuntu5.5 amd64 [installed,local]
libpam-modules/now 1.5.3-5ubuntu5.5 amd64 [installed,local]
libpam-runtime/now 1.5.3-5ubuntu5.5 all [installed,local]
libpam0g/now 1.5.3-5ubuntu5.5 amd64 [installed,local]
libpango-1.0-0/now 1.52.1+ds-1build1 amd64 [installed,local]
libpangocairo-1.0-0/now 1.52.1+ds-1build1 amd64 [installed,local]
libpangoft2-1.0-0/now 1.52.1+ds-1build1 amd64 [installed,local]
libpaper-utils/now 1.1.29build1 amd64 [installed,local]
libpaper1/now 1.1.29build1 amd64 [installed,local]
libpciaccess0/now 0.17-3ubuntu0.24.04.2 amd64 [installed,local]
libpcre2-8-0/now 10.42-4ubuntu2.1 amd64 [installed,local]
libpdfbox-java/now 1:1.8.16-5 all [installed,local]
libperl5.38t64/now 5.38.2-3.2ubuntu0.2 amd64 [installed,local]
libpgm-5.3-0t64/now 5.3.128~dfsg-2.1build1 amd64 [installed,local]
libpixman-1-0/now 0.42.2-1build1 amd64 [installed,local]
libplacebo338/now 6.338.2-2build1 amd64 [installed,local]
libpng16-16t64/now 1.6.43-5build1 amd64 [installed,local]
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libswresample4/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libswscale7/now 7:6.1.1-3ubuntu5 amd64 [installed,local]
libsynctex2/now 2023.20230311.66589-9build3 amd64 [installed,local]
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libzzip-0-13t64/now 0.13.72+dfsg.1-1.2build1 amd64 [installed,local]
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openssh-client/now 1:9.6p1-3ubuntu13.14 amd64 [installed,local]
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passwd/now 1:4.13+dfsg1-4ubuntu3.2 amd64 [installed,local]
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perl-modules-5.38/now 5.38.2-3.2ubuntu0.2 all [installed,local]
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pfb2t1c2pfb/now 0.3-11build1 amd64 [installed,local]
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sudo/now 1.9.15p5-3ubuntu5.24.04.1 amd64 [installed,local]
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t1utils/now 1.41-4build3 amd64 [installed,local]
tar/now 1.35+dfsg-3build1 amd64 [installed,local]
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R --version:
R version 4.4.3 (2025-02-28) -- "Trophy Case"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-conda-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
R --silent -e 'installed.packages(.Library)[, c(1,3)]':
> installed.packages(.Library)[, c(1,3)]
Package Version
abind "abind" "1.4-8"
anndata "anndata" "0.8.0"
AnnotationDbi "AnnotationDbi" "1.68.0"
AnnotationFilter "AnnotationFilter" "1.30.0"
askpass "askpass" "1.2.1"
assertthat "assertthat" "0.2.1"
assorthead "assorthead" "1.0.1"
backports "backports" "1.5.0"
base "base" "4.4.3"
base64enc "base64enc" "0.1-3"
basilisk "basilisk" "1.18.0"
basilisk.utils "basilisk.utils" "1.18.0"
beachmat "beachmat" "2.22.0"
beeswarm "beeswarm" "0.4.0"
BH "BH" "1.87.0-1"
Biobase "Biobase" "2.66.0"
BiocFileCache "BiocFileCache" "2.14.0"
BiocGenerics "BiocGenerics" "0.52.0"
BiocIO "BiocIO" "1.16.0"
BiocManager "BiocManager" "1.30.26"
BiocNeighbors "BiocNeighbors" "2.0.1"
BiocParallel "BiocParallel" "1.40.2"
BiocSingular "BiocSingular" "1.22.0"
BiocVersion "BiocVersion" "3.20.0"
biocViews "biocViews" "1.74.0"
biomaRt "biomaRt" "2.62.1"
Biostrings "Biostrings" "2.74.1"
biovizBase "biovizBase" "1.54.0"
bit "bit" "4.6.0"
bit64 "bit64" "4.6.0-1"
bitops "bitops" "1.0-9"
blob "blob" "1.2.4"
bluster "bluster" "1.16.0"
boot "boot" "1.3-32"
brew "brew" "1.0-10"
brio "brio" "1.1.5"
broom "broom" "1.0.10"
broom.helpers "broom.helpers" "1.22.0"
BSgenome "BSgenome" "1.74.0"
bslib "bslib" "0.9.0"
cachem "cachem" "1.1.0"
Cairo "Cairo" "1.7-0"
callr "callr" "3.7.6"
car "car" "3.1-3"
carData "carData" "3.0-5"
cards "cards" "0.7.0"
caret "caret" "7.0-1"
caTools "caTools" "1.18.3"
CellChat "CellChat" "2.2.0"
cellranger "cellranger" "1.1.0"
checkmate "checkmate" "2.3.3"
circlize "circlize" "0.4.16"
class "class" "7.3-23"
cli "cli" "3.6.5"
clipr "clipr" "0.8.0"
clock "clock" "0.7.3"
clue "clue" "0.3-66"
cluster "cluster" "2.1.8.1"
coda "coda" "0.19-4.1"
codetools "codetools" "0.2-20"
collections "collections" "0.3.9"
colorspace "colorspace" "2.1-2"
combinat "combinat" "0.0-8"
commonmark "commonmark" "2.0.0"
compiler "compiler" "4.4.3"
ComplexHeatmap "ComplexHeatmap" "2.22.0"
conflicted "conflicted" "1.2.0"
conquer "conquer" "1.3.3"
corrplot "corrplot" "0.95"
cowplot "cowplot" "1.2.0"
cpp11 "cpp11" "0.5.2"
crayon "crayon" "1.5.3"
credentials "credentials" "2.0.3"
crosstalk "crosstalk" "1.2.2"
curl "curl" "7.0.0"
cyclocomp "cyclocomp" "1.1.1"
data.table "data.table" "1.17.8"
datasets "datasets" "4.4.3"
DBI "DBI" "1.2.3"
dbplyr "dbplyr" "2.5.1"
DDRTree "DDRTree" "0.1.5"
DelayedArray "DelayedArray" "0.32.0"
deldir "deldir" "2.0-4"
Deriv "Deriv" "4.2.0"
desc "desc" "1.4.3"
DESeq2 "DESeq2" "1.46.0"
devtools "devtools" "2.4.6"
diagram "diagram" "1.6.5"
dials "dials" "1.4.2"
DiceDesign "DiceDesign" "1.10"
dichromat "dichromat" "2.0-0.1"
diffobj "diffobj" "0.3.6"
digest "digest" "0.6.37"
dir.expiry "dir.expiry" "1.14.0"
doBy "doBy" "4.7.0"
doParallel "doParallel" "1.0.17"
dotCall64 "dotCall64" "1.2"
downlit "downlit" "0.4.4"
dplyr "dplyr" "1.1.4"
dqrng "dqrng" "0.4.1"
dtplyr "dtplyr" "1.3.2"
e1071 "e1071" "1.7-16"
edgeR "edgeR" "4.4.2"
ellipsis "ellipsis" "0.3.2"
ensembldb "ensembldb" "2.30.0"
evaluate "evaluate" "1.0.5"
fansi "fansi" "1.0.6"
farver "farver" "2.1.2"
fastcluster "fastcluster" "1.3.0"
fastDummies "fastDummies" "1.7.5"
fastICA "fastICA" "1.2-7"
fastmap "fastmap" "1.2.0"
fastmatch "fastmatch" "1.1-6"
fgsea "fgsea" "1.32.4"
filelock "filelock" "1.0.3"
fitdistrplus "fitdistrplus" "1.2-4"
FNN "FNN" "1.1.4.1"
fontawesome "fontawesome" "0.5.3"
forcats "forcats" "1.0.1"
foreach "foreach" "1.5.2"
forecast "forecast" "8.24.0"
foreign "foreign" "0.8-90"
formatR "formatR" "1.14"
Formula "Formula" "1.2-5"
fracdiff "fracdiff" "1.5-3"
fs "fs" "1.6.6"
furrr "furrr" "0.3.1"
futile.logger "futile.logger" "1.4.3"
futile.options "futile.options" "1.0.1"
future "future" "1.67.0"
future.apply "future.apply" "1.20.0"
gargle "gargle" "1.6.0"
gbRd "gbRd" "0.4.12"
generics "generics" "0.1.4"
GenomeInfoDb "GenomeInfoDb" "1.42.3"
GenomeInfoDbData "GenomeInfoDbData" "1.2.13"
GenomicAlignments "GenomicAlignments" "1.42.0"
GenomicFeatures "GenomicFeatures" "1.58.0"
GenomicRanges "GenomicRanges" "1.58.0"
gert "gert" "2.1.5"
GetoptLong "GetoptLong" "1.0.5"
ggalluvial "ggalluvial" "0.12.5"
GGally "GGally" "2.4.0"
ggbeeswarm "ggbeeswarm" "0.7.2"
ggforce "ggforce" "0.5.0"
ggnetwork "ggnetwork" "0.5.14"
ggplot2 "ggplot2" "4.0.0"
ggprism "ggprism" "1.0.7"
ggpubr "ggpubr" "0.6.2"
ggraph "ggraph" "2.2.2"
ggrastr "ggrastr" "1.0.2"
ggrepel "ggrepel" "0.9.6"
ggridges "ggridges" "0.5.7"
ggsci "ggsci" "4.1.0"
ggsignif "ggsignif" "0.6.4"
ggstats "ggstats" "0.11.0"
ggvenn "ggvenn" "0.1.19"
gh "gh" "1.5.0"
gitcreds "gitcreds" "0.1.2"
GlobalOptions "GlobalOptions" "0.1.2"
globals "globals" "0.18.0"
glue "glue" "1.8.0"
goftest "goftest" "1.2-3"
googledrive "googledrive" "2.1.2"
googlesheets4 "googlesheets4" "1.1.2"
gower "gower" "1.0.2"
GPfit "GPfit" "1.0-9"
gplots "gplots" "3.2.0"
graph "graph" "1.84.1"
graphics "graphics" "4.4.3"
graphlayouts "graphlayouts" "1.2.2"
grDevices "grDevices" "4.4.3"
grid "grid" "4.4.3"
gridBase "gridBase" "0.4-7"
gridExtra "gridExtra" "2.3"
grImport "grImport" "0.9-7"
gtable "gtable" "0.3.6"
gtools "gtools" "3.9.5"
Gviz "Gviz" "1.50.0"
hardhat "hardhat" "1.4.2"
haven "haven" "2.5.5"
HDF5Array "HDF5Array" "1.34.0"
here "here" "1.0.2"
hexbin "hexbin" "1.28.5"
highr "highr" "0.11"
Hmisc "Hmisc" "5.2-4"
hms "hms" "1.1.4"
HSMMSingleCell "HSMMSingleCell" "1.26.0"
htmlTable "htmlTable" "2.4.3"
htmltools "htmltools" "0.5.8.1"
htmlwidgets "htmlwidgets" "1.6.4"
httpuv "httpuv" "1.6.16"
httr "httr" "1.4.7"
httr2 "httr2" "1.2.1"
ica "ica" "1.0-3"
ids "ids" "1.0.1"
igraph "igraph" "2.2.1"
infer "infer" "1.0.9"
ini "ini" "0.3.1"
InteractionSet "InteractionSet" "1.34.0"
interp "interp" "1.1-6"
ipred "ipred" "0.9-15"
IRanges "IRanges" "2.40.1"
IRdisplay "IRdisplay" "1.1"
IRkernel "IRkernel" "1.3.2"
irlba "irlba" "2.3.5.1"
isoband "isoband" "0.2.7"
iterators "iterators" "1.0.14"
janitor "janitor" "2.2.1"
jpeg "jpeg" "0.1-11"
jquerylib "jquerylib" "0.1.4"
jsonlite "jsonlite" "2.0.0"
KEGGREST "KEGGREST" "1.46.0"
kernlab "kernlab" "0.9-33"
KernSmooth "KernSmooth" "2.23-26"
knitr "knitr" "1.50"
ks "ks" "1.15.1"
labeling "labeling" "0.4.3"
labelled "labelled" "2.16.0"
lambda.r "lambda.r" "1.2.4"
languageserver "languageserver" "0.3.16"
later "later" "1.4.4"
lattice "lattice" "0.22-7"
latticeExtra "latticeExtra" "0.6-31"
lava "lava" "1.8.2"
lazyeval "lazyeval" "0.2.2"
leidenbase "leidenbase" "0.1.35"
lhs "lhs" "1.2.0"
lifecycle "lifecycle" "1.0.4"
limma "limma" "3.62.2"
lintr "lintr" "3.2.0"
listenv "listenv" "0.10.0"
lme4 "lme4" "1.1-37"
lmtest "lmtest" "0.9-40"
locfit "locfit" "1.5-9.12"
LoomExperiment "LoomExperiment" "1.24.0"
lubridate "lubridate" "1.9.4"
magrittr "magrittr" "2.0.4"
MASS "MASS" "7.3-65"
MAST "MAST" "1.32.0"
Matrix "Matrix" "1.7-4"
MatrixGenerics "MatrixGenerics" "1.18.1"
MatrixModels "MatrixModels" "0.5-4"
matrixStats "matrixStats" "1.5.0"
mclust "mclust" "6.1.2"
memoise "memoise" "2.0.1"
metapod "metapod" "1.14.0"
methods "methods" "4.4.3"
mgcv "mgcv" "1.9-3"
microbenchmark "microbenchmark" "1.5.0"
miloR "miloR" "2.2.0"
mime "mime" "0.13"
miniUI "miniUI" "0.1.2"
minqa "minqa" "1.2.8"
misc3d "misc3d" "0.9-1"
modeldata "modeldata" "1.5.1"
modelenv "modelenv" "0.2.0"
ModelMetrics "ModelMetrics" "1.2.2.2"
modelr "modelr" "0.1.11"
MOFA2 "MOFA2" "1.16.0"
monocle "monocle" "2.34.0"
multicool "multicool" "1.0.1"
munsell "munsell" "0.5.1"
mvtnorm "mvtnorm" "1.3-3"
Nebulosa "Nebulosa" "1.16.0"
network "network" "1.19.0"
nlme "nlme" "3.1-168"
nloptr "nloptr" "2.2.1"
NMF "NMF" "0.28"
nnet "nnet" "7.3-20"
numDeriv "numDeriv" "2016.8-1.1"
nycflights13 "nycflights13" "1.0.2"
openssl "openssl" "2.3.4"
openxlsx "openxlsx" "4.2.8.1"
otel "otel" "0.2.0"
paletteer "paletteer" "1.6.0"
parallel "parallel" "4.4.3"
parallelDist "parallelDist" "0.2.7"
parallelly "parallelly" "1.45.1"
parsnip "parsnip" "1.3.3"
patchwork "patchwork" "1.3.2"
pbapply "pbapply" "1.7-4"
pbdZMQ "pbdZMQ" "0.3-14"
pbkrtest "pbkrtest" "0.5.5"
pheatmap "pheatmap" "1.0.13"
pillar "pillar" "1.11.1"
pkgbuild "pkgbuild" "1.4.8"
pkgconfig "pkgconfig" "2.0.3"
pkgdown "pkgdown" "2.2.0"
pkgload "pkgload" "1.4.1"
plogr "plogr" "0.2.0"
plot3D "plot3D" "1.4.2"
plotly "plotly" "4.11.0"
plyr "plyr" "1.8.9"
png "png" "0.1-8"
polyclip "polyclip" "1.10-7"
polynom "polynom" "1.4-1"
pracma "pracma" "2.4.6"
praise "praise" "1.0.0"
presto "presto" "1.0.0"
prettyunits "prettyunits" "1.2.0"
prismatic "prismatic" "1.1.2"
pROC "pROC" "1.19.0.1"
processx "processx" "3.8.6"
prodlim "prodlim" "2025.04.28"
profvis "profvis" "0.4.0"
progress "progress" "1.2.3"
progressr "progressr" "0.18.0"
promises "promises" "1.5.0"
ProtGenerics "ProtGenerics" "1.38.0"
proxy "proxy" "0.4-27"
ps "ps" "1.9.1"
purrr "purrr" "1.2.0"
quadprog "quadprog" "1.5-8"
quantmod "quantmod" "0.4.28"
quantreg "quantreg" "6.1"
R.cache "R.cache" "0.17.0"
R.methodsS3 "R.methodsS3" "1.8.2"
R.oo "R.oo" "1.27.1"
R.utils "R.utils" "2.13.0"
R6 "R6" "2.6.1"
ragg "ragg" "1.5.0"
randomForest "randomForest" "4.7-1.2"
RANN "RANN" "2.6.2"
rappdirs "rappdirs" "0.3.3"
RBGL "RBGL" "1.82.0"
rbibutils "rbibutils" "2.3"
rcmdcheck "rcmdcheck" "1.4.0"
RColorBrewer "RColorBrewer" "1.1-3"
Rcpp "Rcpp" "1.1.0"
RcppAnnoy "RcppAnnoy" "0.0.22"
RcppArmadillo "RcppArmadillo" "15.0.2-2"
RcppEigen "RcppEigen" "0.3.4.0.2"
RcppHNSW "RcppHNSW" "0.6.0"
RcppML "RcppML" "0.3.7"
RcppParallel "RcppParallel" "5.1.11-1"
RcppProgress "RcppProgress" "0.4.2"
RcppTOML "RcppTOML" "0.2.3"
RCurl "RCurl" "1.98-1.17"
Rdpack "Rdpack" "2.6.4"
readr "readr" "2.1.5"
readxl "readxl" "1.4.5"
recipes "recipes" "1.3.1"
reformulas "reformulas" "0.4.2"
registry "registry" "0.5-1"
rematch "rematch" "2.0.0"
rematch2 "rematch2" "2.1.2"
remotes "remotes" "2.5.0"
repr "repr" "1.1.7"
reprex "reprex" "2.1.1"
reshape2 "reshape2" "1.4.4"
restfulr "restfulr" "0.0.16"
reticulate "reticulate" "1.44.0"
rex "rex" "1.2.1"
rhdf5 "rhdf5" "2.50.2"
rhdf5filters "rhdf5filters" "1.18.1"
Rhdf5lib "Rhdf5lib" "1.28.0"
Rhtslib "Rhtslib" "3.2.0"
rjson "rjson" "0.2.23"
rlang "rlang" "1.1.6"
rmarkdown "rmarkdown" "2.30"
rngtools "rngtools" "1.5.2"
ROCR "ROCR" "1.0-11"
RODBC "RODBC" "1.3-26"
roxygen2 "roxygen2" "7.3.3"
rpart "rpart" "4.1.24"
rprojroot "rprojroot" "2.1.1"
rsample "rsample" "1.3.1"
Rsamtools "Rsamtools" "2.22.0"
RSpectra "RSpectra" "0.16-2"
RSQLite "RSQLite" "2.4.3"
rstatix "rstatix" "0.7.3"
rstudioapi "rstudioapi" "0.17.1"
rsvd "rsvd" "1.0.5"
rtracklayer "rtracklayer" "1.66.0"
Rtsne "Rtsne" "0.17"
RUnit "RUnit" "0.4.33.1"
rversions "rversions" "3.0.0"
rvest "rvest" "1.0.5"
S4Arrays "S4Arrays" "1.6.0"
S4Vectors "S4Vectors" "0.44.0"
S7 "S7" "0.2.0"
sass "sass" "0.4.10"
ScaledMatrix "ScaledMatrix" "1.14.0"
scales "scales" "1.4.0"
scater "scater" "1.34.1"
scattermore "scattermore" "1.2"
scCustomize "scCustomize" "3.2.0"
sceasy "sceasy" "0.0.7"
scran "scran" "1.34.0"
sctransform "sctransform" "0.4.2"
scuttle "scuttle" "1.16.0"
selectr "selectr" "0.4-2"
sessioninfo "sessioninfo" "1.2.3"
Seurat "Seurat" "5.3.1"
SeuratObject "SeuratObject" "5.2.0"
sfd "sfd" "0.1.0"
shape "shape" "1.4.6.1"
shiny "shiny" "1.11.1"
SingleCellExperiment "SingleCellExperiment" "1.28.1"
sitmo "sitmo" "2.0.2"
slam "slam" "0.1-55"
slider "slider" "0.3.2"
sna "sna" "2.8"
snakecase "snakecase" "0.11.1"
snow "snow" "0.4-4"
sourcetools "sourcetools" "0.1.7-1"
sp "sp" "2.2-0"
spam "spam" "2.11-1"
SparseArray "SparseArray" "1.6.2"
SparseM "SparseM" "1.84-2"
sparsevctrs "sparsevctrs" "0.3.4"
spatstat.data "spatstat.data" "3.1-9"
spatstat.explore "spatstat.explore" "3.5-3"
spatstat.geom "spatstat.geom" "3.6-0"
spatstat.random "spatstat.random" "3.4-2"
spatstat.sparse "spatstat.sparse" "3.1-0"
spatstat.univar "spatstat.univar" "3.1-4"
spatstat.utils "spatstat.utils" "3.2-0"
splines "splines" "4.4.3"
SQUAREM "SQUAREM" "2021.1"
statmod "statmod" "1.5.1"
statnet.common "statnet.common" "4.12.0"
stats "stats" "4.4.3"
stats4 "stats4" "4.4.3"
strawr "strawr" "0.0.92"
stringi "stringi" "1.8.7"
stringr "stringr" "1.6.0"
styler "styler" "1.11.0"
SummarizedExperiment "SummarizedExperiment" "1.36.0"
survival "survival" "3.8-3"
svglite "svglite" "2.2.2"
sys "sys" "3.4.3"
systemfonts "systemfonts" "1.3.1"
tailor "tailor" "0.1.0"
tcltk "tcltk" "4.4.3"
tensor "tensor" "1.5.1"
testthat "testthat" "3.2.3"
textshaping "textshaping" "1.0.4"
tibble "tibble" "3.3.0"
tidygraph "tidygraph" "1.3.1"
tidymodels "tidymodels" "1.4.1"
tidyr "tidyr" "1.3.1"
tidyselect "tidyselect" "1.2.1"
tidyverse "tidyverse" "2.0.0"
timechange "timechange" "0.3.0"
timeDate "timeDate" "4051.111"
tinytex "tinytex" "0.57"
tools "tools" "4.4.3"
trackViewer "trackViewer" "1.42.0"
tseries "tseries" "0.10-58"
TTR "TTR" "0.24.4"
tune "tune" "2.0.1"
tweenr "tweenr" "2.0.3"
txdbmaker "txdbmaker" "1.2.1"
tzdb "tzdb" "0.5.0"
UCSC.utils "UCSC.utils" "1.2.0"
urca "urca" "1.3-4"
urlchecker "urlchecker" "1.0.1"
usethis "usethis" "3.2.1"
utf8 "utf8" "1.2.6"
utils "utils" "4.4.3"
uuid "uuid" "1.2-1"
uwot "uwot" "0.2.3"
VariantAnnotation "VariantAnnotation" "1.52.0"
vctrs "vctrs" "0.6.5"
VGAM "VGAM" "1.1-13"
vipor "vipor" "0.4.7"
viridis "viridis" "0.6.5"
viridisLite "viridisLite" "0.4.2"
vroom "vroom" "1.6.6"
waldo "waldo" "0.6.2"
warp "warp" "0.2.1"
whisker "whisker" "0.4.1"
withr "withr" "3.0.2"
workflows "workflows" "1.3.0"
workflowsets "workflowsets" "1.1.1"
writexl "writexl" "1.5.4"
xfun "xfun" "0.54"
XML "XML" "3.99-0.19"
xml2 "xml2" "1.4.1"
xmlparsedata "xmlparsedata" "1.0.5"
xopen "xopen" "1.0.1"
xtable "xtable" "1.8-4"
xts "xts" "0.14.1"
XVector "XVector" "0.46.0"
yaml "yaml" "2.3.10"
yardstick "yardstick" "1.3.2"
zellkonverter "zellkonverter" "1.16.0"
zip "zip" "2.3.3"
zlibbioc "zlibbioc" "1.52.0"
zoo "zoo" "1.8-14"
>
>
julia -E 'using InteractiveUtils; versioninfo()':
Julia Version 1.12.1
Commit ba1e628ee49 (2025-10-17 13:02 UTC)
Build Info:
Official https://julialang.org release
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: 4 × AMD EPYC 7763 64-Core Processor
WORD_SIZE: 64
LLVM: libLLVM-18.1.7 (ORCJIT, znver3)
GC: Built with stock GC
Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)
Environment:
JULIA_DEPOT_PATH = /opt/julia
JULIA_PKGDIR = /opt/julia
nothing
julia -E 'import Pkg; Pkg.status()':
Status `/opt/julia/environments/v1.12/Project.toml`
[f67ccb44] HDF5 v0.17.2
[7073ff75] IJulia v1.31.1
[c3e4b0f8] Pluto v0.20.20
nothing