Accessing the AllenSDK from the UCSD Data Hub - ajuavinett/CellTypesLesson GitHub Wiki

If you're in a course at UC San Diego (e.g., BIPN 145) you may already have a container set up for you with the allenSDK data. If so, follow these instructions to connect to it and open our Jupyter Notebook.

  1. While either on campus or connected via VPN, go to http://datahub.ucsd.edu and log in.

  2. You’ll land on a page where you’re asked to choose a container to spawn. Choose the one that says BIPN 145.

  3. On the Jupyter home page, go to New > Terminal (upper right corner).

  4. Type > git clone http://www.github.com/ajuavinett/CellTypesLesson.git to clone the lab codebase into your folder.

Note: You don’t need the “>“ — that’s just to indicate where the line starts.

  1. Close the Terminal window. On the Jupyter dashboard, you should now see a folder BIPN 145. Click into it, and open “Introduction to Jupyter Notebooks” From here, you can follow the directions in the Jupyter Notebook. Au revoir!

Note: When you’re all done, go to the Running tab and Shutdown all of your terminal & notebook processes