parse - Robaina/Pynteny Wiki


Translate synteny structure with gene symbols into one with HMM groups, according to provided HMM database.


usage: pynteny parse [-h] [args] 


short long default help
-h --help show this help message and exit
-s --synteny_struc None synteny structure containing gene symbols instead of HMMs
-m --hmm_meta None path to hmm database metadata file. If already downloaded with pynteny download, hmm meta file is retrieved from the default location.
-l --log None path to log file. Log not written by default.