PathoScope 2.0 tutorial

Updated May 2019

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Welcome to the PathoScope tutorial! In this tutorial you will learn the basics of using PathoScope to analyze your metagenomic samples. We will provide you with a step-by-step procedure that will transform your unintelligible sequencing reads into a meaningful picture of the microbial content present in your sample.