Page Index - NYU-BFX/hic-bench GitHub Wiki
17 page(s) in this GitHub Wiki:
- Home
- HiC-bench: a Hi-C analysis pipeline that allows combinatorial parameter exploration and benchmarking
- How to set up and run a pipeline
- Software requirements
- Help
- License
- Acknowledgements
- References
- Availability
- Availability of "data" directory and precompiled binaries
- Automated ChIPseq report
- Custom Pipeline Steps
- Differential boundary insulation
- Differential intra TAD activity (test set)
- Example run on UltraViolet (NYU Langone Health HPC)
- Set external read pairs as input
- User manual