STEP 1 Create Folders.md - HCS7194-AU18/HCS7194 GitHub Wiki

# Make a Alias to your scratch folder PATH to easy navigation
# Replace <osu8618> with your folder name
alias go_wd='cd /fs/scratch/PAS1407/osu8618/'
# Create a shell variable to your working directory
wd=/fs/scratch/PAS1407/osu8618/

# Go to `/fs/scratch/PAS1407/osu8618/`
go_wd

# As a good practice, start  folder names with Upper case letters
mkdir RNASeq_Gene_Expression_Analysis

# Create a folder for the Raw Sequence data

mkdir RNASeq_Gene_Expression_Analysis/RAW_Reads

# Create a folder for the software

mkdir RNASeq_Gene_Expression_Analysis/Software

# Create a folder for the Preprocessing

mkdir RNASeq_Gene_Expression_Analysis/Preprocessing

# Create a folder for Read-Alignment

mkdir RNASeq_Gene_Expression_Analysis/Read_Alignment

# Create a folder for Expression estimation

mkdir RNASeq_Gene_Expression_Analysis/Expression

# Create a folder for Differential expression analysis

mkdir RNASeq_Gene_Expression_Analysis/Differential_Expression_Analysis

# Create a folder to save the metadata

mkdir RNASeq_Gene_Expression_Analysis/Metadata